PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013369
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRF
Protein Properties Length: 395aa    MW: 43049 Da    PI: 8.7738
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013369genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.11.7e-24147191145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCs+++++g+k+C+rH+hrgr+rsrk++e+
  DCAR_013369 147 DPEPGRCRRTDGKKWRCSKDAVAGHKYCDRHVHRGRNRSRKPVES 191
                  79****************************************986 PP
2QLQ34.56.4e-1382112232
          QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 
                   F+  Q+ +L+ Q+l+++++++++ +Pp+L+
  DCAR_013369  82 CFSMGQWKELELQALIFRHIINGASIPPQLI 112
                  699**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.5E-481117IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166613.16482117IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.0E-983113IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.195147191IPR014977WRC domain
PfamPF088791.1E-20148190IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MELQLNQWRE QLKKDEADQE AKLAGLFLSQ NHHHYSSALP LFAPDADEPT CTKLSTYSPS  60
SATALSSYKY GRKQGVGGGR SCFSMGQWKE LELQALIFRH IINGASIPPQ LIHLLITNKS  120
FILSSPSPPY YQYPPAWMQS WEKSAMDPEP GRCRRTDGKK WRCSKDAVAG HKYCDRHVHR  180
GRNRSRKPVE SPTHKPAAKP NASPAIPGSA TDNNGNRGLF KSNTMSPMSA EPLTFIGGGS  240
TSFPLSRPSN SPDVLHFNQR SVESLAETKG LSNMDSSEAD KSDSQTLRHF FDDWPRAIQE  300
PRNTMHNASV GTSLSISVPG KTPTSDVSLK LFPCIGEEAE SGSGEGNGER EGSQLHWGTT  360
WGGNQMGGPL AEALRSSSST SSPLSVLHQL RAST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017247901.10.0PREDICTED: growth-regulating factor 3-like
TrEMBLA0A165YUR80.0A0A165YUR8_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32832138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.11e-60growth-regulating factor 4