PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_013212 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GRAS | ||||||||
Protein Properties | Length: 549aa MW: 60949.6 Da PI: 4.8172 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 425.6 | 4e-130 | 182 | 548 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +e+L++cA+av+++dl a++l+++l+ ++s +g+p+qRl ay++e+L arl++s+++++k+l+++e + sse ++++++++e++P++kf+++ aN DCAR_013212 182 KEVLVNCAKAVADNDLLTAEWLISELRPMVSVSGNPLQRLGAYMLEGLVARLSSSGNSICKTLKCKEPT---SSELFSYMNVLYEICPYFKFGYMSAN 276 689*****************************************************************9...9************************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 aI ea++ e+ +HiiD++i++G+QW +L+qaLa+Rp+gpp++RiTg+++++ + + l +g+rL+++A++++vpfefn+ +++ ++++++ DCAR_013212 277 GAIAEAMKDENSIHIIDIQIGEGAQWFTLIQALAARPGGPPRIRITGIADASLDyvRGGGLDIVGQRLSSLADSCKVPFEFNA---ATISGSDIDSIK 371 **************************************************99889999************************9...58889999**** PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 + pgEa+aVn+++ lh+++desv + ++rd++L++ kslsPkvv+vveqea++n+ F+ rfle+++y++a+f+s++++lpr++++ri+vE+++++r+ DCAR_013212 372 ILPGEAIAVNFAFILHHIPDESVGTVNHRDKILRFAKSLSPKVVTVVEQEANTNT-LFMPRFLESMNYHMAIFESIDVTLPRDHKQRISVEQHCFARD 468 *****************************************************75.7***************************************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ivn vacegaer+er+e lekWr+r+ eaGFkp+pls+++++++k+ll++++ + y+++e++g+l+lgW +++Lv++SaWr DCAR_013212 469 IVNTVACEGAERVERQELLEKWRSRFIEAGFKPYPLSSYVNATIKSLLENYN-ECYTLKEKDGALYLGWLKQNLVAASAWR 548 ****************************************************.77*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.721 | 155 | 529 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-127 | 182 | 548 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MTNYYSMQSS QDQQYFYQSG RFYNEPAHEF ESQLWNHHQY LDDNLWLDDS SQEMQVSGKA 60 SQSYGTPETA TAIGGYTGTN FVVSRSANGS PVSGESSQTY PSVVNHSPGN NIYNSQVSDS 120 FYMGDFVNLK HKIKEIETAM LGPESDTEMS ADISLFGAQS EMSSEKDYVN QMIAIISNGD 180 IKEVLVNCAK AVADNDLLTA EWLISELRPM VSVSGNPLQR LGAYMLEGLV ARLSSSGNSI 240 CKTLKCKEPT SSELFSYMNV LYEICPYFKF GYMSANGAIA EAMKDENSIH IIDIQIGEGA 300 QWFTLIQALA ARPGGPPRIR ITGIADASLD YVRGGGLDIV GQRLSSLADS CKVPFEFNAA 360 TISGSDIDSI KILPGEAIAV NFAFILHHIP DESVGTVNHR DKILRFAKSL SPKVVTVVEQ 420 EANTNTLFMP RFLESMNYHM AIFESIDVTL PRDHKQRISV EQHCFARDIV NTVACEGAER 480 VERQELLEKW RSRFIEAGFK PYPLSSYVNA TIKSLLENYN ECYTLKEKDG ALYLGWLKQN 540 LVAASAWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-60 | 178 | 548 | 1 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017247093.1 | 0.0 | PREDICTED: scarecrow-like protein 21 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A165YZC8 | 0.0 | A0A165YZC8_DAUCS; Uncharacterized protein | ||||
STRING | VIT_19s0090g01740.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA681 | 24 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_013212 |
Publications ? help Back to Top | |||
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