PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_013176 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | NAC | ||||||||
Protein Properties | Length: 316aa MW: 36521.1 Da PI: 6.4076 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.1 | 1.5e-52 | 10 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeelv++yL++k++++++++ +i+e+d+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + + DCAR_013176 10 LPPGFRFHPTDEELVMHYLCRKCASQQISV-PIIAEIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGK--PS 104 79****************************.88***************7666789*************************************98..77 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kk Lvfy g+ap+g+kt+W+mheyrl DCAR_013176 105 TVGIKKALVFYAGKAPRGVKTNWIMHEYRL 134 8***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-62 | 6 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.071 | 10 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-27 | 11 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MKNSGSEIEL PPGFRFHPTD EELVMHYLCR KCASQQISVP IIAEIDLYKF DPWQLPEMAL 60 YGEKEWYFFS PRDRKYPNGS RPNRAAGTGY WKATGADKPI GKPSTVGIKK ALVFYAGKAP 120 RGVKTNWIMH EYRLANVDRS ANKKNSNLRL DDWVLCRIYN KKGTLEKHQI VNQSPVSYNE 180 MEDMVESKPN FLAFDQTLVK QSMSPQTESM PQQRSVMPMQ TAKAYSPFDT SESGARFHTD 240 SSCSEHVLSP EFTYEKEREV QSEPKWSELE NAISNSLDFP FNYDYFHDNP FTPEPQYNDQ 300 QFSLQDMFMF SQKPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-86 | 2 | 167 | 7 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017243840.1 | 0.0 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-129 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A162AD51 | 0.0 | A0A162AD51_DAUCS; Uncharacterized protein | ||||
STRING | EOX92686 | 1e-144 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1239 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-132 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_013176 |