PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013101
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 237aa    MW: 26473.2 Da    PI: 4.8393
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013101genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.6e-17652147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g WT eEd +lv +++q+G+g+W+++++  g++R +k+c++rw++ 
      DCAR_013101  6 KGQWTSEEDNKLVSYIQQHGSGDWTAVSKNTGLHRNGKSCRLRWLNQ 52
                     799*****************************************996 PP
2Myb_DNA-binding50.26e-1659104148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++Tt+Ed+++++  ++ G++ W++Ia+ ++ gRt++++k++w+ +l
      DCAR_013101  59 RGNFTTDEDLIIIRHQALNGNR-WSAIAAQLP-GRTDNDIKNYWHVHL 104
                      89********************.*********.***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.844153IPR017930Myb domain
SMARTSM007178.2E-13555IPR001005SANT/Myb domain
SuperFamilySSF466895.62E-286100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-23760IPR009057Homeodomain-like
CDDcd001673.40E-11951No hitNo description
PfamPF139214.9E-16967No hitNo description
PROSITE profilePS5129424.68354108IPR017930Myb domain
SMARTSM007171.6E-1458106IPR001005SANT/Myb domain
CDDcd001679.19E-1161104No hitNo description
Gene3DG3DSA:1.10.10.608.6E-2361107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEETEKGQWT SEEDNKLVSY IQQHGSGDWT AVSKNTGLHR NGKSCRLRWL NQLNPNIKRG  60
NFTTDEDLII IRHQALNGNR WSAIAAQLPG RTDNDIKNYW HVHLKKKFSN VNSCSDNYGA  120
EGTTKYEGDV ATIGGLDYIK AYYDKMYKNS ITGNSIIPTG NSITPPQNQL DENFFDDIGI  180
PTMEEIDRLL LEDPDAPLPP PSPHSAPSTA PEQEGHDYLL NISGPLDHDQ LSFGPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2761087108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A165Z2I31e-176A0A165Z2I3_DAUCS; Uncharacterized protein
STRINGEMJ160551e-43(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74650.12e-45myb domain protein 31