PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_013029 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 202aa MW: 21498.4 Da PI: 9.9316 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 25 | 74 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp++ + r++lg+f tae+Aa+a++aa+ +++g DCAR_013029 25 HYRGVRKRP-WGRYAAEIRDPYK---KCRVWLGSFHTAEDAARAYDAAAIRFRG 74 6********.**********865...69***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.1E-33 | 25 | 88 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-21 | 25 | 82 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-30 | 25 | 82 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.1E-11 | 25 | 74 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.196 | 25 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.20E-17 | 25 | 84 | No hit | No description |
PRINTS | PR00367 | 6.1E-10 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-10 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MVGPVVQEQV GPKAEQVGPD VEEVHYRGVR KRPWGRYAAE IRDPYKKCRV WLGSFHTAED 60 AARAYDAAAI RFRGARAKTN FAPVRQSPAR SSVENSASGG SVGVHALPRV GVTRRLAAGF 120 PVTTPCHPVV DPRVFCQFVY PPGMMCNVVH PIPNAWRAGG VHGGALSDSG SSSVVDGLHR 180 SSGSTSKELN LELTLAPPSG Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-22 | 25 | 85 | 5 | 65 | ATERF1 |
3gcc_A | 4e-22 | 25 | 85 | 5 | 65 | ATERF1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017246211.1 | 1e-146 | PREDICTED: ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A165Z4S9 | 1e-144 | A0A165Z4S9_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03800.1 | 5e-23 | ERF domain protein 10 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_013029 |