PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013028
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 344aa    MW: 39043.9 Da    PI: 8.7156
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013028genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94.1e-09121142426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  + C++f+r G C++GdrC ++Hg
  DCAR_013028 121 VVCQDFRR-GMCPRGDRCEYSHG 142
                  68******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.4E-8117143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-6117144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953117144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.04E-5117146IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-6121142IPR000571Zinc finger, CCCH-type
SMARTSM0035639152175IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MSSFGGGDER RFQPHQLFLS KRLRPVDIPP RKLLSRRAAN LEIPVYPRLD EETPLAKFLP  60
CNNRDEEDEA DVYSADQFRM FEFKVRKCTR SRSHDWTDCP FSHPGEKARR RDPRKFNYSG  120
VVCQDFRRGM CPRGDRCEYS HGVFECWLHP ARYRTQACKD GRSCTRKICF FAHTSKQLRI  180
LPQDSANGHH FCPHSHCSSL SPNSTLMRMP DGSPPVSPSL PMGAYRPTRG QMALAELAEL  240
KKRHGSGYKK ELIKLFQSLN LDEKNSSTGR PKNRLFVDVS KLHDQVPMFF SPSSSESSSS  300
PSDPSSSGSS HFSKNNLDLT EENGTSGAPD LGWVHELCDD WNN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246461.10.0PREDICTED: zinc finger CCCH domain-containing protein 2
TrEMBLA0A162AEC10.0A0A162AEC1_DAUCS; Uncharacterized protein
STRINGVIT_12s0028g03300.t017e-90(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105952125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-63C3H family protein