PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_013000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 329aa MW: 37859 Da PI: 9.5827 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 39.1 | 9.5e-13 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ie r++tf R++ + KKA+EL +LC+++ avii + DCAR_013000 11 IEKAKVRTTTFLTRKKNLTKKAKELATLCGIKTAVIINPP 50 888999******************************9655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.446 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.3E-8 | 1 | 65 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 7.54E-16 | 2 | 90 | No hit | No description |
SuperFamily | SSF55455 | 9.42E-16 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-11 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MGRAKLNMEL IEKAKVRTTT FLTRKKNLTK KAKELATLCG IKTAVIINPP RQVTPQGRPL 60 KLETYPENDD VVLELIDKYK GQSSEDRKKR TSLLPCFFQE RNRKVQRALA KLRSTNVRSK 120 YPTWDLRFDN FMEEDLRNVA VFLENKIVDA KGKLGQMKAN VSNSNNIYNA YLLQQQQMML 180 TRERSMEVGN QNGINYLFTI NPPQTGFMQV PVPMPMPIQQ QNFAFLDHYQ DQRMVTFGHD 240 YIGGAPNIEY NANSSTPLYN YPMMTGDSIT YANNSLRDPQ NYSDEGRQPF AHHQMENHHM 300 RLGSTPHQMV ATSHQVDAHA QFDENHIE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 25 | KAKVRTTTFLTRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017246734.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL103 | ||||
TrEMBL | A0A165Z5L4 | 0.0 | A0A165Z5L4_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2457 | 22 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 3e-20 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_013000 |