PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_012982 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 27428.6 Da PI: 10.0575 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.3e-16 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ed +lv +v+++G +W+++++ g++R++k+c++rw ++l DCAR_012982 11 KGQWTPDEDIKLVIYVQEHGASNWSLVPENAGLKRSGKSCRLRWVNHL 58 799******************************************996 PP | |||||||
2 | Myb_DNA-binding | 49.8 | 7.6e-16 | 65 | 109 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g++T eE++++++ +++lG++ W++Ia+++ gRt++++k++w++++ DCAR_012982 65 GKFTHEEELIIKHHHALLGNR-WAAIAAHLT-GRTDNDVKNYWYTHM 109 79*******************.********9.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.839 | 6 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.71E-28 | 9 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-12 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 11 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-22 | 12 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.20E-11 | 14 | 58 | No hit | No description |
PROSITE profile | PS51294 | 22.763 | 59 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-14 | 63 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-23 | 65 | 113 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-14 | 65 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.13E-12 | 66 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MVRPPVVAAK KGQWTPDEDI KLVIYVQEHG ASNWSLVPEN AGLKRSGKSC RLRWVNHLRP 60 GIKVGKFTHE EELIIKHHHA LLGNRWAAIA AHLTGRTDND VKNYWYTHMK KKLDKVDGPV 120 DEPTKNPVAP PSTLALVAAP PAVAPTLPPT LDPAVAPTVA SVAPPTLAPA AAPPTVTHAV 180 TIPVVTHAAT PVFAHRCVLP TPTFAHASVF APDRAVFDNP LTAPTSSFAS GRAILDYSFT 240 APAPAPNFVR GREGFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-26 | 11 | 114 | 7 | 109 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017245831.1 | 0.0 | PREDICTED: transcription factor MYB30-like | ||||
Refseq | XP_017245832.1 | 0.0 | PREDICTED: transcription factor MYB30-like | ||||
TrEMBL | A0A165Z660 | 0.0 | A0A165Z660_DAUCS; Uncharacterized protein | ||||
STRING | XP_010532312.1 | 6e-51 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28910.1 | 1e-51 | myb domain protein 30 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_012982 |