PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012982
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 257aa    MW: 27428.6 Da    PI: 10.0575
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012982genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-161158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT++Ed +lv +v+++G  +W+++++  g++R++k+c++rw ++l
      DCAR_012982 11 KGQWTPDEDIKLVIYVQEHGASNWSLVPENAGLKRSGKSCRLRWVNHL 58
                     799******************************************996 PP

2Myb_DNA-binding49.87.6e-1665109248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g++T eE++++++ +++lG++ W++Ia+++  gRt++++k++w++++
      DCAR_012982  65 GKFTHEEELIIKHHHALLGNR-WAAIAAHLT-GRTDNDVKNYWYTHM 109
                      79*******************.********9.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.839658IPR017930Myb domain
SuperFamilySSF466892.71E-289105IPR009057Homeodomain-like
SMARTSM007173.2E-121060IPR001005SANT/Myb domain
PfamPF002492.0E-151158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-221264IPR009057Homeodomain-like
CDDcd001676.20E-111458No hitNo description
PROSITE profilePS5129422.76359113IPR017930Myb domain
SMARTSM007173.3E-1463111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2365113IPR009057Homeodomain-like
PfamPF002492.8E-1465108IPR001005SANT/Myb domain
CDDcd001679.13E-1266109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MVRPPVVAAK KGQWTPDEDI KLVIYVQEHG ASNWSLVPEN AGLKRSGKSC RLRWVNHLRP  60
GIKVGKFTHE EELIIKHHHA LLGNRWAAIA AHLTGRTDND VKNYWYTHMK KKLDKVDGPV  120
DEPTKNPVAP PSTLALVAAP PAVAPTLPPT LDPAVAPTVA SVAPPTLAPA AAPPTVTHAV  180
TIPVVTHAAT PVFAHRCVLP TPTFAHASVF APDRAVFDNP LTAPTSSFAS GRAILDYSFT  240
APAPAPNFVR GREGFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26111147109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245831.10.0PREDICTED: transcription factor MYB30-like
RefseqXP_017245832.10.0PREDICTED: transcription factor MYB30-like
TrEMBLA0A165Z6600.0A0A165Z660_DAUCS; Uncharacterized protein
STRINGXP_010532312.16e-51(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.11e-51myb domain protein 30