PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012971
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 318aa    MW: 35507.9 Da    PI: 6.0308
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012971genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.2e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l ++++ +G+g+W+  ++  g+ R++k+c++rw +yl
      DCAR_012971 14 KGPWTQEEDSKLMQYIQTHGPGNWRILPKNAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding49.21.2e-1567111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg ++ eE+e +++++  lG++ W++Ia +++ gRt++++k++w+++
      DCAR_012971  67 RGGFSFEEEETIIQLHSVLGNK-WSAIAGRLP-GRTDNEIKNYWNTH 111
                      78899*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-26564IPR009057Homeodomain-like
PROSITE profilePS5129424.909965IPR017930Myb domain
SuperFamilySSF466897.7E-3111108IPR009057Homeodomain-like
SMARTSM007173.0E-131363IPR001005SANT/Myb domain
PfamPF002491.7E-151461IPR001005SANT/Myb domain
CDDcd001672.30E-111661No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129418.7166116IPR017930Myb domain
SMARTSM007171.4E-1466114IPR001005SANT/Myb domain
PfamPF002494.0E-1467111IPR001005SANT/Myb domain
CDDcd001672.34E-1170112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGRSPCCDKN GLKKGPWTQE EDSKLMQYIQ THGPGNWRIL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGGF SFEEEETIIQ LHSVLGNKWS AIAGRLPGRT DNEIKNYWNT HIRKRLLDMG  120
LDPVTHAPRL DFLNLSTILG SAQLNVANLL GLQNIVNPEL VLRLANLLSS GHNQNLQLLN  180
QANLLQTPVQ DMSSIINQAQ IMEQNLVNYQ NSEENFQTPL VQQNYGQYGI NDQARGNASM  240
MPQMMNGSQG GFDFDSLVSN TNTTTTTNTP LSSAVPTPLT SSSTFINGSS TEDEKDSFCS  300
NMFKFEIPES LNFDDFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-32121162105MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-32121162105C-Myb DNA-Binding Domain
1msf_C8e-32121162105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245835.10.0PREDICTED: myb-related protein 330-like
SwissprotQ9LDR81e-97MY102_ARATH; Transcription factor MYB102
TrEMBLA0A165Z6H40.0A0A165Z6H4_DAUCS; Uncharacterized protein
STRINGXP_006469819.11e-119(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.14e-92MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]