PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012944
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 470aa    MW: 51622.2 Da    PI: 5.7703
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012944genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding475.8e-152673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed  l+++vk++G g+W+++ +   + R++k+c++rw ++l
      DCAR_012944 26 KGPWTAAEDAVLLEYVKRHGEGNWNAVQKNTSLQRCGKSCRLRWANHL 73
                     79******************************************9986 PP
2Myb_DNA-binding50.83.9e-1679122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eE++ ++d++++ G++ W++ a  ++ gRt++++k++w++
      DCAR_012944  79 KGPFTPEEEKTIIDLHAKIGNK-WARMATQLP-GRTDNEIKNYWNT 122
                      79********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6452173IPR017930Myb domain
SuperFamilySSF466894.12E-3024120IPR009057Homeodomain-like
SMARTSM007172.7E-122575IPR001005SANT/Myb domain
PfamPF002491.9E-132673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-232780IPR009057Homeodomain-like
CDDcd001673.34E-102873No hitNo description
PROSITE patternPS0017504150IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129424.49474128IPR017930Myb domain
SMARTSM007172.6E-1578126IPR001005SANT/Myb domain
PfamPF002495.4E-1579122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2581127IPR009057Homeodomain-like
CDDcd001678.56E-1181124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MVSHGGRGGI SNNSGEGGGL HMVLKKGPWT AAEDAVLLEY VKRHGEGNWN AVQKNTSLQR  60
CGKSCRLRWA NHLRPFLKKG PFTPEEEKTI IDLHAKIGNK WARMATQLPG RTDNEIKNYW  120
NTRLKRRQRA GLPVYPVELL QQYNHRHHLK TLQNIPLSPS CSFASIISAA AAASSSTSHQ  180
NQYCCQNQSS VNFMKNCTPL DLLDYTPYRD NMNPSNSFSL PRQVINNGMT SGNGFSYQNG  240
QLFHQALSGK SLSFDNLGLN SGPDPVSSSA TNIDPVGLFG MGTGNNELSS IQNTVQTSNN  300
SVYTGSDDVM GVASSEGDEE YDKVARGNSG LLGDLLEESQ TIKRHKDNSE KNIKAADDQV  360
SADTFFKDVN TNGLSNSTGS AFISGMNDKK DEAIEEMNIM DEDLLRLLDC PSPVCIPDWY  420
DVGSSNNSNY SSREPSNVTI AHVPNIKPDD DDDWDEDICC WTNMPRVLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29241275107B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246249.10.0PREDICTED: transcription factor GAMYB-like
TrEMBLA0A165Z7690.0A0A165Z769_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.29e-69myb domain protein 101