PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_012883

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

HD-ZIP

Protein Properties

Length: 277aa MW: 31954.4 Da PI: 5.2615

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_012883	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.3	3e-19	50	103	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q+++Le+ Fe +++++ ++ LA++lgL+ rqV vWFqNrRa++k DCAR_012883 50 KKRRLSHNQVKALEKNFEVDNKLDPCKKVALAHELGLQPRQVAVWFQNRRARWK 103 45689************************************************9 PP
2	HD-ZIP_I/II	123.9	7.5e-40	50	141	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls++qvk+LE++Fe ++kL+p +Kv+la+eLglqprqvavWFqnrRAR+k kqlE+dy+ Lk++y++l+ + +Le+++++L++elke DCAR_012883 50 KKRRLSHNQVKALEKNFEVDNKLDPCKKVALAHELGLQPRQVAVWFQNRRARWKIKQLETDYNNLKANYESLRLNYGQLEQNKHSLTSELKE 141 9****************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.56E-19	43	106	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.601	45	105	IPR001356	Homeobox domain
SMART	SM00389	4.3E-17	48	109	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-16	50	103	IPR001356	Homeobox domain
CDD	cd00086	4.21E-15	50	106	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-19	56	103	IPR009057	Homeodomain-like
PRINTS	PR00031	4.2E-5	76	85	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	80	103	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.2E-5	85	101	IPR000047	Helix-turn-helix motif
Pfam	PF02183	4.6E-12	105	146	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MKRFSSLYPP QEKQQQEENC HHSRDFQAML DGLEDKDSIS IDEVEQNGDK KRRLSHNQVK 60 ALEKNFEVDN KLDPCKKVAL AHELGLQPRQ VAVWFQNRRA RWKIKQLETD YNNLKANYES 120 LRLNYGQLEQ NKHSLTSELK ELKAKLDNEN VDKKTSLYES ESTGHRRSWN EPEPSNSTNN 180 LVEPKVSPYS DSSVFNQEPI RGFQLLPAPH EDLSNPGPDF CFPSQMNPYE ELMHSKSVLG 240 NAHQQQWTEM EEASPFGSVD ESCNIYSVDP VLTFGW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	105	RRARWKIKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269\|PubMed:10527431, ECO:0000269\|PubMed:12065416}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269\|PubMed:10527431, ECO:0000269\|PubMed:12065416, ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017246322.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-6-like
Swissprot	P46668	2e-40	ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6
TrEMBL	A0A165Z8U3	0.0	A0A165Z8U3_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12939	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	7e-43	homeobox protein 6

Link Out ? help Back to Top
Phytozome	DCAR_012883

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]