PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012851
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 769aa    MW: 83990.9 Da    PI: 6.8827
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012851genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.89.7e-16620656135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  DCAR_012851 620 CHHCGVSEssTPAMRRGPAGPRTLCNACGLMWANKGT 656
                  **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF086276.2E-3695387IPR013936Chloroquine-resistance transporter-like
PROSITE profilePS5132011.805483518IPR010399Tify domain
SMARTSM009790.0014483518IPR010399Tify domain
PfamPF062003.7E-7487517IPR010399Tify domain
PfamPF062031.5E-14550591IPR010402CCT domain
PROSITE profilePS5101712.65550592IPR010402CCT domain
SMARTSM004012.0E-8614667IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.85E-10614661No hitNo description
Gene3DG3DSA:3.30.50.103.4E-14619660IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.09E-14620660No hitNo description
PROSITE patternPS003440620647IPR000679Zinc finger, GATA-type
PfamPF003208.3E-14620656IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034635Biological Processglutathione transport
GO:0046686Biological Processresponse to cadmium ion
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MAIPSSYSYL SAALSLPSTS PFLTKLTATK TLTINLQNPR HHHQQQFNIH IRHAAHNFFK  60
FTHKNTRTRL NCASPDPGEL NLTHSTSTSD NNKLILICSA ITIALAISNR VLYKLALVPM  120
KEYPFFLAQI NTFGYVIIYV SVLYIRYSAG IVTNEMMAIP KFRFVIIGFL EALGVVAGMS  180
SGAMLPGPAI PVLNQTFLLW QLAFSTILLG RRYSLNKIAG CLLVAVGVVI AVTSGSDSGQ  240
MLSGIGVMWP LLMVASSAFQ AGASILKESV FIDATKRLKG KLLDIFVVNS FGSGFQALFV  300
LLCLPLLSNL KGIPFSQLHL YIMSGAGCFF NIGTNTTGCD GAPLLPLLYI ITNIAFNISL  360
LNLVKISSAV VSSLAVLLSV PLSIYILALP LPYLPEGVTL SPFFLWGSAV LVMVMAAPLQ  420
ARPYNNMQVD DDDDVVEYEE EAAFDDDYID DEIDDCRVAD VNTTPQRHQQ LSYNISGSGG  480
LVVASRTSEL SLAFEGEVYV FPAVTPEKVQ AVLLLLGGRD TPVGVPPEIS FVPDNRVMTD  540
SPKRSNLSRR IASLVRFREK RKERCFDKKI RYTVRKEVAQ RMHRKNGQFA SLREDCRSSN  600
LDSQRSLPQG DGSCHLETLC HHCGVSESST PAMRRGPAGP RTLCNACGLM WANKGTLRDL  660
RRGGRNHPVD QVELGTPAKI KPLLLEDQHY AGTVDDLVIP EDPSKAIVEV ANHHQSIDPD  720
KDFPDTAEAL AKSLPIEIGS PLGTLDQDTL VDFADTSEAE MDIPTNFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1539544DSPKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017247167.10.0PREDICTED: protein CLT2, chloroplastic
TrEMBLA0A165Z9V50.0A0A165Z9V5_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-61ZIM-like 1