PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_012730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 269aa MW: 29793.9 Da PI: 6.7943 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63 | 6.3e-20 | 117 | 166 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+ta+eAa a++ a+ kl+g DCAR_012730 117 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAQEAALAYDMAAYKLRG 166 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.88E-32 | 116 | 173 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 117 | 175 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.906 | 117 | 174 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-22 | 117 | 175 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-36 | 117 | 180 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-11 | 118 | 129 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.7E-14 | 118 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-11 | 140 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MPVTAAAAAA PYYYYYDTYN SQSLSFSPPA AAAAATNLYP SSSSSSTNIL GSGDEFGSHA 60 SCIGLNQLSP SQIHQIQDQI NQQYQQQQLQ WPPQRQRTLN FHDPNPTPVA PPKPGKLYRG 120 VRQRHWGKWV AEIRLPKNRT RLWLGTFDTA QEAALAYDMA AYKLRGDSAR LNFSHLSGNF 180 GDYKPLHAAV EAKLQAICQT LADGNNNKKQ QPSKTKKLDV KLEGSSDTNS DGPEFGQDDE 240 TAWELGSAQN FMLQKYPSYE IDWASIEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-19 | 115 | 173 | 3 | 62 | ATERF1 |
3gcc_A | 2e-19 | 115 | 173 | 3 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017243869.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF060-like | ||||
Swissprot | Q8H1E4 | 1e-60 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A165ZDL1 | 0.0 | A0A165ZDL1_DAUCS; Uncharacterized protein | ||||
STRING | POPTR_0005s16690.1 | 1e-70 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1610 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 4e-57 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_012730 |
Publications ? help Back to Top | |||
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