PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_012553 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | NAC | ||||||||
Protein Properties | Length: 248aa MW: 28194.9 Da PI: 7.419 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.1 | 6.3e-31 | 7 | 85 | 53 | 129 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++++wyfFs rd+kyatg r+nrat+sgyWkatgkd++v++ ++ vg++ktLvfyk+rap+g+kt W+mhe+rle DCAR_012553 7 LNSTDWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVVDPgtNSCIVGMRKTLVFYKNRAPNGVKTGWIMHEFRLE 85 45689*************************************9555666***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.51 | 1 | 103 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.01E-38 | 4 | 103 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-15 | 11 | 84 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MHHAAKLNST DWYFFSFRDR KYATGFRTNR ATTSGYWKAT GKDRTVVDPG TNSCIVGMRK 60 TLVFYKNRAP NGVKTGWIMH EFRLENPLIP PKEDWVLCRV FYKSKTEINS QLSPQNVYHS 120 EAKFAGAHTF PHSPQIMLPA ACNKNNYHLH QITTSQSPAP HHQNPNNLPT VPQLNPNFLH 180 LSHQIHTNHL NEMIMLKSAC DEEDPYGFLL NMEFEAESYM GGGMASSVED MKFEDDCCMP 240 SLIGHCD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-27 | 1 | 106 | 62 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-27 | 1 | 106 | 62 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-27 | 1 | 106 | 62 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-27 | 1 | 106 | 62 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-27 | 1 | 106 | 65 | 171 | NAC domain-containing protein 19 |
3swm_B | 5e-27 | 1 | 106 | 65 | 171 | NAC domain-containing protein 19 |
3swm_C | 5e-27 | 1 | 106 | 65 | 171 | NAC domain-containing protein 19 |
3swm_D | 5e-27 | 1 | 106 | 65 | 171 | NAC domain-containing protein 19 |
3swp_A | 5e-27 | 1 | 106 | 65 | 171 | NAC domain-containing protein 19 |
3swp_B | 5e-27 | 1 | 106 | 65 | 171 | NAC domain-containing protein 19 |
3swp_C | 5e-27 | 1 | 106 | 65 | 171 | NAC domain-containing protein 19 |
3swp_D | 5e-27 | 1 | 106 | 65 | 171 | NAC domain-containing protein 19 |
4dul_A | 5e-27 | 1 | 106 | 62 | 168 | NAC domain-containing protein 19 |
4dul_B | 5e-27 | 1 | 106 | 62 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017241031.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X1 | ||||
TrEMBL | A0A161Y3J9 | 0.0 | A0A161Y3J9_DAUCS; Uncharacterized protein | ||||
STRING | XP_009800923.1 | 3e-74 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1882 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-56 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_012553 |