PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012548
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 267aa    MW: 30359.5 Da    PI: 4.5426
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012548genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT +Ed +l++ v+++G ++W++ ++  g+ R++k+c++rw +yl
      DCAR_012548 14 KGPWTCDEDRILINHVTLHGHENWRALPKQAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding52.89.2e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+e ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
      DCAR_012548  67 RGNFSEEEEETIINLHEVLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-24564IPR009057Homeodomain-like
PROSITE profilePS5129414.866961IPR017930Myb domain
SuperFamilySSF466895.14E-2910108IPR009057Homeodomain-like
SMARTSM007173.3E-111363IPR001005SANT/Myb domain
PfamPF002492.7E-131461IPR001005SANT/Myb domain
CDDcd001671.99E-81661No hitNo description
PROSITE profilePS5129425.58662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2665116IPR009057Homeodomain-like
SMARTSM007171.2E-1466114IPR001005SANT/Myb domain
PfamPF002493.4E-1567112IPR001005SANT/Myb domain
CDDcd001672.55E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVRAPCCQKM GLKKGPWTCD EDRILINHVT LHGHENWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF SEEEEETIIN LHEVLGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRIKKIQ  120
ESNAAEIKKE DDINAEPSRS RKEEEIYQPN SPQQQSSVTT TTTTSVDDNN EEAMDADALV  180
DFLESDDAFW SEVFSTENSG STSDYFLADN SGTATSEFNG DEFHLEFPEF DGSDSDINRM  240
MNMKSDVVDS FWYDMLTNSS GQLPEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017239067.10.0PREDICTED: myb-related protein Myb4
SwissprotQ9SJX84e-80MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A169WDN10.0A0A169WDN1_DAUCS; Uncharacterized protein
STRINGPOPTR_0002s03960.12e-91(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.17e-71myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]