PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_012542 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 179aa MW: 20034.2 Da PI: 9.6144 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.8 | 1.5e-19 | 38 | 89 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+++AeIrdp++ng +r++lg+f t eeAa+a+++a+ +l+g+ DCAR_012542 38 KYRGIRRRP-WGKYAAEIRDPNKNG--ARVWLGTFSTGEEAARAYDRAAYALRGH 89 8********.***********8887..**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 1.4E-25 | 8 | 165 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
Pfam | PF00847 | 1.4E-14 | 38 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.3E-23 | 38 | 97 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-31 | 38 | 97 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.74E-19 | 38 | 97 | No hit | No description |
PROSITE profile | PS51032 | 24.46 | 38 | 96 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-35 | 38 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-11 | 39 | 50 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-11 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MDANHGSTKS YSNEVTSKIN TTRKTGKMAE PYVPKEIKYR GIRRRPWGKY AAEIRDPNKN 60 GARVWLGTFS TGEEAARAYD RAAYALRGHQ ALLNFPNENH YKTSPVQEIS EFSKNLVDEI 120 SNHKAPASSS ANYADAPGSS ISFKREKGAE FIEFEYVEDN LLDELLGTQN PNKRSRSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-29 | 38 | 98 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017241134.1 | 1e-130 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
TrEMBL | A0A166CHK1 | 1e-129 | A0A166CHK1_DAUCS; Uncharacterized protein | ||||
STRING | XP_006480088.1 | 2e-39 | (Citrus sinensis) | ||||
STRING | XP_006443851.1 | 2e-39 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 2e-30 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_012542 |