PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012365
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 317aa    MW: 35543 Da    PI: 5.2974
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012365genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding475.8e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT+ Ede+l  +++  G g+W++ +++ g+ R++k+c++rw +yl
      DCAR_012365 14 RGRWTAREDEILTAYIRANGEGSWRSLPKKAGLLRCGKSCRLRWINYL 61
                     8*******************************99************97 PP
2Myb_DNA-binding47.64e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ +E++ ++++++ lG++ W++Ia ++  gRt++++k++w+++l
      DCAR_012365  67 RGQFSSDEEDVIIKLHAALGNK-WSLIAGHLD-GRTDNEIKNYWNSHL 112
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.401961IPR017930Myb domain
SuperFamilySSF466892.27E-2711108IPR009057Homeodomain-like
SMARTSM007171.9E-111363IPR001005SANT/Myb domain
PfamPF002492.0E-121461IPR001005SANT/Myb domain
CDDcd001676.77E-81661No hitNo description
PROSITE profilePS5129424.78862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-2565115IPR009057Homeodomain-like
SMARTSM007171.5E-1266114IPR001005SANT/Myb domain
PfamPF002493.6E-1367112IPR001005SANT/Myb domain
CDDcd001671.87E-870112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGRTPCCEKV GLKRGRWTAR EDEILTAYIR ANGEGSWRSL PKKAGLLRCG KSCRLRWINY  60
LRPDVKRGQF SSDEEDVIIK LHAALGNKWS LIAGHLDGRT DNEIKNYWNS HLSRKAKSLP  120
VFHQIKPVET RVLMEQLQKQ GKKGRSKAPK IPPSEKNLLE IPEDCSLKVQ IEPPTPFMEE  180
SLGDILKWTP DNISNECTRL PDQQGLWNDI DLGKDIAGGT FLDSGFGMDF LGDLDFNGSL  240
ETALATATGN ELVQANHNQE TNTPSVTNSA SCIHKESVEN PGWDYLDSAM QGDNLFWDTE  300
QERLLISGLW EATDEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-21121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240066.10.0PREDICTED: myb-related protein Zm38-like
TrEMBLA0A166CD490.0A0A166CD49_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.16e-68myb domain protein 111