PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_012343 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GRAS | ||||||||
Protein Properties | Length: 561aa MW: 63725.8 Da PI: 5.4396 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 274.6 | 3.1e-84 | 176 | 548 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevsPilkfsh 95 l +lLl++A+ + +g+ a++lL r + as++g+p++Rla+yf eAL++r++r ++s+ k ++ ++ +++n s+ + + + + ++ P+ k+ + DCAR_012343 176 LAHLLLAAADKIWDGKIDSARRLLMRCECKASKSGNPVERLASYFSEALQERIFReTGSRRIKMVSYEARTPNNglSTGVDKTVLATHDDIPFSKVMQ 273 579****************************************************888899999999888888865333444444478889******* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 +++ q+Il+ v+ e+ +HiiD+ i G++Wp+++qaL++R+ ++ +l+iT+++ ++k+++e + +rL++fA+ l++ f+fnv++++++ dl+ e DCAR_012343 274 FATTQTILDHVAMETNIHIIDLHIRSGIHWPPMIQALSERKaHPIQHLKITALDT---EDKQKVEDICKRLESFANPLNIAFSFNVVTVDDIRDLKKE 368 ****************************************955556********9...58************************************** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 + ++ gEa+++ l ++ + +++ +++++++ +++P +++v e +a+ ns+sF +rf+eal +ys+ fd+le l r ++ r+++E+ ++ DCAR_012343 369 LFGIQAGEAVVIYAPTILRTMI----PWPDKLETLMRVIGDIRPLLMIVQEVDANDNSPSFINRFVEALFFYSTWFDCLEDCLDRSNQYRMTLENNYF 462 ****************999998....55555566**************************************************************** PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk.vk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 gr i n++++eg+er+ r + Wr+ + ++ + +v++ ++ qa+++l+k ++ + +++++ ++l++ Wk+ p++s+S W+ DCAR_012343 463 GRGIINCISTEGEERITRSVKIDVWRSYFARFQMVEVEVPKSSLRQAEMVLKKeFPcARFCTLNNDGKCLIIRWKGTPMFSLSTWK 548 *************************************************998626677878999*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.598 | 150 | 526 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-81 | 176 | 548 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 561 aa Download sequence Send to blast |
MSDDFGLSSP NLIQTEYRPL EVLEKEIYTQ AEQASISKIN VPEERNLVSI DLGHDINKGK 60 EADMGFGGAH HELPCSLSPE IDFPLKNKPD SNSASLFELL GRYEKRGKNL ADEHCNPSSE 120 ITTSSRKLST EEIIRVAAER YIEFPGKDLD CVTTFIHPYG SALSSLSLEE TRGADLAHLL 180 LAAADKIWDG KIDSARRLLM RCECKASKSG NPVERLASYF SEALQERIFR ETGSRRIKMV 240 SYEARTPNNG LSTGVDKTVL ATHDDIPFSK VMQFATTQTI LDHVAMETNI HIIDLHIRSG 300 IHWPPMIQAL SERKAHPIQH LKITALDTED KQKVEDICKR LESFANPLNI AFSFNVVTVD 360 DIRDLKKELF GIQAGEAVVI YAPTILRTMI PWPDKLETLM RVIGDIRPLL MIVQEVDAND 420 NSPSFINRFV EALFFYSTWF DCLEDCLDRS NQYRMTLENN YFGRGIINCI STEGEERITR 480 SVKIDVWRSY FARFQMVEVE VPKSSLRQAE MVLKKEFPCA RFCTLNNDGK CLIIRWKGTP 540 MFSLSTWKFQ EAPLYVELFD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-29 | 199 | 548 | 26 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017240062.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A161Y331 | 0.0 | A0A161Y331_DAUCS; Uncharacterized protein | ||||
STRING | XP_009628660.1 | 1e-149 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17490.1 | 1e-46 | RGA-like protein 3 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_012343 |