PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_012331

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 110aa MW: 12374.5 Da PI: 12.0257

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_012331	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00049	42	88	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 e+ rrR ++++ + +L++l+P++ +s K l+ + + +YI L DCAR_012331 42 GGFEIVRRRNHEVRRKVRTLKKLVPSS---SSSKgLD--GLFRDTADYILAL 88 557899********************8...6666576..5556666666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	6.8E-5	35	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-6	36	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	8.638	38	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MGICPKSFLV TVEKSFVTKR NTGKQGQSST RTLMKRSRRR AGGFEIVRRR NHEVRRKVRT 60 LKKLVPSSSS SKGLDGLFRD TADYILALQM RIQLMQVMFN GLSSAPDDI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	63	RRNHEVRRKVRTLKKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that modulates the balance between cellular proliferation and differentiation in root growth. Does not act through cytokinin and auxin signaling, but by repressing peroxidase expression in the elongation zone. {ECO:0000269\|PubMed:21074051}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by reactive oxygen species. {ECO:0000269\|PubMed:21074051}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017243391.1	8e-24	PREDICTED: transcription factor UPBEAT1-like
Swissprot	O22901	4e-17	BH151_ARATH; Transcription factor UPBEAT1
TrEMBL	A0A161WXX8	5e-73	A0A161WXX8_DAUCS; Uncharacterized protein

Link Out ? help Back to Top
Phytozome	DCAR_012331

Publications ? help Back to Top
Elo A,Lyznik A,Gonzalez DO,Kachman SD,Mackenzie SA Nuclear genes that encode mitochondrial proteins for DNA and RNA metabolism are clustered in the Arabidopsis genome. Plant Cell, 2003. 15(7): p. 1619-31 [PMID:12837951] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tsukagoshi H,Busch W,Benfey PN Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root. Cell, 2010. 143(4): p. 606-16 [PMID:21074051] Jia L Is Reactive Oxygen Species (ROS) the underlying factor for inhibited root growth in Osspr1? Plant Signal Behav, 2011. 6(7): p. 1024-5 [PMID:22020626] Reyt G,Boudouf S,Boucherez J,Gaymard F,Briat JF Iron and ferritin dependent ROS distribution impact Arabidopsis root system architecture. Mol Plant, 2015. [PMID:25385697] Reyt G,Boudouf S,Boucherez J,Gaymard F,Briat JF Iron- and ferritin-dependent reactive oxygen species distribution: impact on Arabidopsis root system architecture. Mol Plant, 2015. 8(3): p. 439-53 [PMID:25624148] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]