PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012135
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TALE
Protein Properties Length: 567aa    MW: 63646.2 Da    PI: 7.2948
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012135genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.2e-093684051954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  DCAR_012135 368 FEHflHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVR 405
                  554459******************************88 PP
2BELL100.21.6e-32236304472
         BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  e ++kk+kLl +l+eV+krY+qy++q+q+v+ sFe vagl +a+p+++lAlka+S+hFr Lk+ai++q+
  DCAR_012135 236 EQRSKKSKLLCMLDEVYKRYRQYYQQMQAVVTSFESVAGLSTAAPFANLALKAMSKHFRYLKNAITDQL 304
                  7899**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.9E-47170302IPR006563POX domain
PfamPF075262.5E-37175301IPR006563POX domain
PROSITE profilePS5007112.098346409IPR001356Homeobox domain
SMARTSM003897.3E-10349413IPR001356Homeobox domain
CDDcd000866.60E-12349410No hitNo description
SuperFamilySSF466895.99E-17351416IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-27352413IPR009057Homeodomain-like
PfamPF059201.4E-18366405IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MAEGFDSQYH VPQQSRRDKL RVGCNLDNTS SSLLPPFYDP SIMTSSDLLN FQHGVKEERM  60
NLMGYISSCS SSNSHNLYMD PQASFHLNPA HIQDLNNNTN PNNFYQNNQL RVLDQSFAGV  120
LPSGQGLSLS LKSSQQTHQN SAPLSLNLQR SYEQQAYDLS RSSVPLGPFT GYALILKGSR  180
FLKPAQQMLE EICDVDKGNF QNEKFSGDAC LLDPIPLETN LSRGDVSDDD PRSSVEQRSK  240
KSKLLCMLDE VYKRYRQYYQ QMQAVVTSFE SVAGLSTAAP FANLALKAMS KHFRYLKNAI  300
TDQLQFTIKS YGQVNYGKDG IPRAENADTS IYGQKPIQNM GFIEHQPVWR PQRGLPERAV  360
TVLRAWLFEH FLHPYPTDTD KLMLAKQTGL SRNQVSNWFI NARVRLWKPM VEEIHNLETR  420
QKPSQRDEQS AEKTNNHLHA SDSVPSENAS TSTQRVHELP SKRSRDDYSN NIMTGEEPMN  480
LLYGNALRHQ HVGVGINGPV GTSGVSLTLG LQNNGIGMSE PFAMNAARRF GIEASNEGFV  540
MGTFETQNRQ FGRDYIGGQL LHDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15355413563Homeobox protein Meis2
3k2a_B2e-15355413563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1478810.0FJ147881.1 Daucus carota subsp. sativus clone BAC C126C02 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017242900.10.0PREDICTED: BEL1-like homeodomain protein 9
TrEMBLA0A166C7760.0A0A166C776_DAUCS; Uncharacterized protein
STRINGVIT_08s0007g01290.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35202237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-102TALE family protein