PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_012015 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 238aa MW: 26241.3 Da PI: 5.6927 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.3 | 8.2e-14 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+++ + +G+ +W t + + g++R++k+c++rw++yl DCAR_012015 14 KGAWSPEEDFTLKNYLQTHGSAgNWITLPLKAGLKRCGKSCRLRWLNYL 62 79******************999************************97 PP | |||||||
2 | Myb_DNA-binding | 50.6 | 4.5e-16 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T+eEd +++++ ++lG++ W+ Ia+++ gRt++++k++w++ DCAR_012015 69 GPFTKEEDSIILNLYNKLGSR-WSVIASHLE-GRTDNDVKNYWNT 111 89*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.561 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-27 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-9 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-12 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-22 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.66E-6 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 23.524 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-25 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.73E-12 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGRAPCCDKS KVKKGAWSPE EDFTLKNYLQ THGSAGNWIT LPLKAGLKRC GKSCRLRWLN 60 YLRPDIKHGP FTKEEDSIIL NLYNKLGSRW SVIASHLEGR TDNDVKNYWN TKMRKKLLAA 120 KAGMNTEDNA STNLLYENAY GGYMEFITNS EFSGCPETKV QDYEIDTLSS FRDNANAGAS 180 WAENGGGGDH NELLFGSGSG LSLSCPAAGD DLLDGFDFLE EIMKSSDEME STLGHAR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-23 | 14 | 117 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017240275.1 | 1e-177 | PREDICTED: transcription factor RAX1-like | ||||
Refseq | XP_017240276.1 | 1e-177 | PREDICTED: transcription factor RAX1-like | ||||
Refseq | XP_017240277.1 | 1e-177 | PREDICTED: transcription factor RAX1-like | ||||
Swissprot | Q9FKL2 | 1e-64 | MYB36_ARATH; Transcription factor MYB36 | ||||
TrEMBL | A0A166C440 | 1e-175 | A0A166C440_DAUCS; Uncharacterized protein | ||||
STRING | XP_009799606.1 | 7e-70 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 3e-67 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_012015 |
Publications ? help Back to Top | |||
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