PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_011951

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

GRF

Protein Properties

Length: 1018aa MW: 113610 Da PI: 6.6545

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_011951	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77	1.9e-24	883	927	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ DCAR_011951 883 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVET 927 79****************************************996 PP
2	QLQ	54.3	4.2e-19	816	849	2	35
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 +FT++Q+q+L++Q+l++Ky+a++ P+P+eLl i DCAR_011951 816 PFTPTQWQELEHQALIFKYMASGNPIPHELLSTI 849 8*****************************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50946	16.396	155	242	IPR005113	uDENN domain
Pfam	PF03456	7.8E-5	162	240	IPR005113	uDENN domain
SMART	SM00799	3.3E-34	271	692	IPR001194	DENN domain
PROSITE profile	PS50211	34.297	271	692	IPR001194	DENN domain
Pfam	PF02141	3.0E-24	579	692	IPR001194	DENN domain
SMART	SM00951	7.3E-12	815	851	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	9.5E-15	816	849	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.425	816	851	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.448	883	927	IPR014977	WRC domain
Pfam	PF08879	1.2E-20	884	926	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 1018 aa Download sequence Send to blast
MENKEDTGSP GWGASFFMQT TGKAVAAAAA AATAVHSPRP SVVFSTKDDS GNHLQKLQRQ 60 VSRVLKGLSQ PPESKTGVYN PEILTSQKRQ WAKSFQLQSL DHHKILKEPS RLFESMVVIG 120 LHPSCDIMAL QHLYFGRKSE GSSIFKNALG QHQSRVEPNL EPQVLFVYPP EKQLPIKYRD 180 LLSFCFPAGV EVHAVERTPS MSELNEILIG QEHLKQSDLS FVFRLQAYAD DSTLYGCCVL 240 VDEIIQRPSG LVSMISDVQP TQLPLSRHIL TTRRCYCILS RIPCFELHFG VLNSIFTEER 300 LERLTKSIGD LDAEFPVESG NSENLDETSC SISPENREDS MLSGNVEISH SSISDSIPSK 360 GINEEFLDSQ LEPLNQEGDI SAGVDVAVVN DPVTLKFPSE KESFVAAQMS EVCDTLVDDR 420 ANSKQISQRR VPSTVLPLLR HQHNESSESS SSIQFSTSED RNLRSDADDT ELEEASFSGQ 480 SSDHQSSSNG DILDWAKASL FVVTKPVVEN NHGSLQIISE YYQLPCPARG STVKFHPLEH 540 LHPLEYQRPD ETVLHIGGST IDLKSCSTGL EMAEAYHALM AEEEATALSV QAVASLCGSL 600 RLEHVLTFFA GALLEKQIVF VCSNLGILSA SVLSIIPLLR PYQWQSLLMP VLPNDMLDFL 660 DAPVPYIVGV KNKTTEVQSK LTNALIVDVN KNQVKSQTIP QLPKQKELFS LLSPYHQKLV 720 GESYLGRRRP IYEYTDVQAE AAKGFLSVLR SYLESLCSNL RSHTITNVQS NDDKVSLLLK 780 ESFIESFASR DRPFMRIKMM MMSPNASGAR NNTRFPFTPT QWQELEHQAL IFKYMASGNP 840 IPHELLSTIK TSSWDPLSNL LHLHPPQQIG WNHYHMGYGR KIDPEPGRCR RTDGKKWRCS 900 KEAYPDSKYC ERHMHRGRNR SRKPVETNLT SSTTSSMNDI SLSLPKTGVP ISSNTRKSPQ 960 NLSPSPYSVF QAKASHQFGP SLSSQNGVTT LNSTPFLYPH SRPSERNYRF ALFCDFA*

Sequence ? help Back to Top

Protein Sequence Length: 1018 aa Download sequence Send to blast

MENKEDTGSP GWGASFFMQT TGKAVAAAAA AATAVHSPRP SVVFSTKDDS GNHLQKLQRQ  60
VSRVLKGLSQ PPESKTGVYN PEILTSQKRQ WAKSFQLQSL DHHKILKEPS RLFESMVVIG  120
LHPSCDIMAL QHLYFGRKSE GSSIFKNALG QHQSRVEPNL EPQVLFVYPP EKQLPIKYRD  180
LLSFCFPAGV EVHAVERTPS MSELNEILIG QEHLKQSDLS FVFRLQAYAD DSTLYGCCVL  240
VDEIIQRPSG LVSMISDVQP TQLPLSRHIL TTRRCYCILS RIPCFELHFG VLNSIFTEER  300
LERLTKSIGD LDAEFPVESG NSENLDETSC SISPENREDS MLSGNVEISH SSISDSIPSK  360
GINEEFLDSQ LEPLNQEGDI SAGVDVAVVN DPVTLKFPSE KESFVAAQMS EVCDTLVDDR  420
ANSKQISQRR VPSTVLPLLR HQHNESSESS SSIQFSTSED RNLRSDADDT ELEEASFSGQ  480
SSDHQSSSNG DILDWAKASL FVVTKPVVEN NHGSLQIISE YYQLPCPARG STVKFHPLEH  540
LHPLEYQRPD ETVLHIGGST IDLKSCSTGL EMAEAYHALM AEEEATALSV QAVASLCGSL  600
RLEHVLTFFA GALLEKQIVF VCSNLGILSA SVLSIIPLLR PYQWQSLLMP VLPNDMLDFL  660
DAPVPYIVGV KNKTTEVQSK LTNALIVDVN KNQVKSQTIP QLPKQKELFS LLSPYHQKLV  720
GESYLGRRRP IYEYTDVQAE AAKGFLSVLR SYLESLCSNL RSHTITNVQS NDDKVSLLLK  780
ESFIESFASR DRPFMRIKMM MMSPNASGAR NNTRFPFTPT QWQELEHQAL IFKYMASGNP  840
IPHELLSTIK TSSWDPLSNL LHLHPPQQIG WNHYHMGYGR KIDPEPGRCR RTDGKKWRCS  900
KEAYPDSKYC ERHMHRGRNR SRKPVETNLT SSTTSSMNDI SLSLPKTGVP ISSNTRKSPQ  960
NLSPSPYSVF QAKASHQFGP SLSSQNGVTT LNSTPFLYPH SRPSERNYRF ALFCDFA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	4e-48	HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBank	HG975519	4e-48	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017242366.1	0.0	PREDICTED: uncharacterized protein LOC108214721
TrEMBL	A0A161WWW2	0.0	A0A161WWW2_DAUCS; Uncharacterized protein
STRING	XP_009596796.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-49	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	DCAR_011951