PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_011934 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 27552.1 Da PI: 4.3406 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.6 | 3.2e-18 | 46 | 96 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr + +g+Wv+eIr p++ r r++lg+f++ae+Aa+a +aa +l+g DCAR_011934 46 CKYRGVRKRN-WGKWVSEIRMPNS---RERIWLGSFDSAEKAARAFDAALYCLRG 96 79*****887.**********933...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.91E-29 | 46 | 106 | No hit | No description |
Pfam | PF00847 | 1.4E-10 | 46 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.273 | 47 | 104 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-20 | 47 | 104 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-30 | 47 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-33 | 47 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 48 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MTDKAREYSS TTPSCGTSEA HKYNHLLAPV KSSEAEKNSA TSSSSCKYRG VRKRNWGKWV 60 SEIRMPNSRE RIWLGSFDSA EKAARAFDAA LYCLRGPNAN FNFPNTPPEI PGGRSLTPAE 120 IQAAATQFAN SGEPSLNNCA PGLPEAESAS PSPSPSPSQS QSQSPTYGAT DLNMNMNMNM 180 DGTETSVFDQ YSTMGPGWTE NGVPDFGIFP GFDDLSNEFY MPSQLNNGAD YQDVEEQCEY 240 TTYQESFLWN F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-17 | 40 | 105 | 7 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00151 | DAP | Transfer from AT1G19210 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017241001.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF017-like | ||||
TrEMBL | A0A166C1Z0 | 0.0 | A0A166C1Z0_DAUCS; Uncharacterized protein | ||||
STRING | XP_010099089.1 | 8e-68 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1939 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 4e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_011934 |