PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_011833 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | G2-like | ||||||||
Protein Properties | Length: 350aa MW: 39139.5 Da PI: 8.6965 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98 | 6.9e-31 | 72 | 125 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++F++av++LGG+e+AtPk +l++m++kgL+++hvkSHLQ++R+ DCAR_011833 72 PRLRWTPDLHRCFIQAVDKLGGQERATPKLVLQMMNIKGLSISHVKSHLQMHRS 125 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-28 | 68 | 126 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.226 | 68 | 128 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.88E-15 | 69 | 126 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-23 | 71 | 127 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.3E-9 | 73 | 124 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MKETSDTNSE DWKTISYDNI DKEEDGGGSE EKLVCARKNG GISSSNSTVE ESEKSTKGAS 60 GSVRQYNRSK NPRLRWTPDL HRCFIQAVDK LGGQERATPK LVLQMMNIKG LSISHVKSHL 120 QMHRSKKMED PDEVLSEPGL LGTRDYNHHI YNFSQLPMLQ GSGHSPNSRR YANEPWSRHN 180 NPTYTSFMGG FGSSSFKQSL LQPMPAKNNF GTAGSTSHTL GFDFYRTNLS FSAEDQPRVC 240 RNQESFRSHL IQLNMHKEQQ DRGGNNEVIT PKAQKRKAAE NSDSELDLNL SLKQPEKQEA 300 NDKLEASSLS LCLFSSSASN CTSRLEERDM SITGKKHARR MASSLDLTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-17 | 73 | 127 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-17 | 73 | 127 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-17 | 73 | 127 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-17 | 73 | 127 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017241059.1 | 0.0 | PREDICTED: putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A161Y1N4 | 0.0 | A0A161Y1N4_DAUCS; Uncharacterized protein | ||||
STRING | XP_004307667.1 | 3e-58 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8573 | 21 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 4e-43 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_011833 |