PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011787
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 290aa    MW: 32929.4 Da    PI: 8.1319
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011787genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-082570447
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     WT+eE +++  a +++ ++   +W ++a +++ g++  ++   +q++
      DCAR_011787 25 WTKEENKKFESALALFDKDtpdRWIKVADMIP-GKSVLDVMKQYQNL 70
                     ********************************.************97 PP
2Myb_DNA-binding43.57.2e-14124168347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ + +++G+g+W+ I+r +  ++t  q+ s+ qky
      DCAR_011787 124 PWTEDEHRRFLMGLQKHGKGDWRNISRDFVVTKTSTQVASHAQKY 168
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.7E-41570IPR009057Homeodomain-like
PROSITE profilePS512936.8222077IPR017884SANT domain
SMARTSM007172.5E-82173IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-112378IPR009057Homeodomain-like
PfamPF002493.4E-72570IPR001005SANT/Myb domain
CDDcd001679.73E-72571No hitNo description
PROSITE profilePS5129418.244117173IPR017930Myb domain
SuperFamilySSF466891.42E-15119173IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17120172IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.4E-11121167IPR009057Homeodomain-like
SMARTSM007172.2E-10121171IPR001005SANT/Myb domain
PfamPF002492.5E-11124168IPR001005SANT/Myb domain
CDDcd001678.76E-9124168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
METLYPASHT FSSSYLMQDC KSTIWTKEEN KKFESALALF DKDTPDRWIK VADMIPGKSV  60
LDVMKQYQNL VADITDIEAG LVPLPGYLAS SCTLELMKNG EFNGFKKRPM GCRSSDQEKK  120
KGVPWTEDEH RRFLMGLQKH GKGDWRNISR DFVVTKTSTQ VASHAQKYYL RQQLAEGKEK  180
RRPSIHDITT VHLTSDAQSD NHKFASHDKS ALIPLPEKCI TAPKMFLDWN HLDNGSILDC  240
SSTYNDLCVP YSQESALRDF KVQKGGARVA DFGLLDLGFQ FQSTKYQIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1625871173RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237812.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_017237813.10.0PREDICTED: transcription factor DIVARICATA
TrEMBLA0A166BXY80.0A0A166BXY8_DAUCS; Uncharacterized protein
STRINGXP_006486372.11e-108(Citrus sinensis)
STRINGXP_006435669.11e-108(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.14e-81MYB family protein