PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011653
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 281aa    MW: 31898 Da    PI: 5.5963
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011653genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.27e-121462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT +Ed +lv+     G   +W+++++  g+ R++k+c++rw +yl
      DCAR_011653 14 KGPWTVDEDRKLVNFMLTNGQYsCWRAVPKLAGLLRCGKSCRLRWTNYL 62
                     79*****************976***********99************97 PP
2Myb_DNA-binding51.91.8e-1669112247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g  ++ E+   +d++ qlG++ W++Ia++++ gRt++++k++w+++
      DCAR_011653  69 GMLSEHEENVVIDLHSQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 112
                      556899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-17564IPR009057Homeodomain-like
PROSITE profilePS5129411.245962IPR017930Myb domain
SuperFamilySSF466898.58E-2511109IPR009057Homeodomain-like
SMARTSM007174.6E-91364IPR001005SANT/Myb domain
PfamPF002498.5E-111462IPR001005SANT/Myb domain
CDDcd001671.35E-51662No hitNo description
PROSITE profilePS5129425.62763117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2465117IPR009057Homeodomain-like
SMARTSM007171.2E-1367115IPR001005SANT/Myb domain
PfamPF002491.5E-1369112IPR001005SANT/Myb domain
CDDcd001675.30E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTVD EDRKLVNFML TNGQYSCWRA VPKLAGLLRC GKSCRLRWTN  60
YLRPDLKRGM LSEHEENVVI DLHSQLGNRW SKIASHLPGR TDNEIKNHWN THIKKKLRKR  120
GIDPLTHRPL TPPIENFQEP ENHNSSDVHQ KRQTEKFIDP LTVLQDEMQR ILEAPTLEVI  180
NNGFCADEVP LIEPHEILIS NSSAPCCSSS SSTTTSNTNV NILLENSELL PTNSDWLNGD  240
DSATNNVGFW DMDDGFSDLD FLFDDISCSR FLPLLEFGIE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26121175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237257.10.0PREDICTED: protein ODORANT1-like
SwissprotQ9C7U71e-83MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A161Y1870.0A0A161Y187_DAUCS; Uncharacterized protein
STRINGXP_009589696.14e-98(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.14e-92myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]