PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_011508 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 320aa MW: 35565 Da PI: 6.0454 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2e-20 | 147 | 196 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+++taeeAa a+++a+ kl+g DCAR_011508 147 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTYDTAEEAALAYDRAAYKLRG 196 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.19E-33 | 146 | 204 | No hit | No description |
SMART | SM00380 | 1.1E-36 | 147 | 210 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-31 | 147 | 205 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-23 | 147 | 205 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.117 | 147 | 204 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-11 | 148 | 159 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.5E-15 | 148 | 196 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-11 | 170 | 186 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MAAAMNFYNS SPDLSSEDQL MKALEPFMKS APLPSPPPTN TTAPSTSNSF SPFSSQPCNL 60 DPSLSPAQIF SQDFSTSTQM NFDQTGSLGL NQLTPSQILQ IQSQLHLQQH QNYWASNSSS 120 AQKPLNFLGL KPVAMKQGQT PAKPKKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTYDTA 180 EEAALAYDRA AYKLRGDFAR LNFPTLKLDP HYKSLHSCID AKLEAICKNL TDVPQDKKSK 240 TPLKAAVDSV PAEADIPKVD DTSNQNLIFS GQDLSGGSSP ESELTYLDFA EPRFDELENF 300 KSQEIPSMEI DWEALYSLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 146 | 204 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-21 | 146 | 204 | 4 | 63 | ATERF1 |
3gcc_A | 3e-21 | 146 | 204 | 4 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00026 | PBM | Transfer from AT1G78080 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017237897.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF057-like | ||||
TrEMBL | A0A162AL69 | 0.0 | A0A162AL69_DAUCS; Uncharacterized protein | ||||
STRING | POPTR_0005s07900.1 | 6e-84 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1610 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 2e-47 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_011508 |