PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011286
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 259aa    MW: 29810.6 Da    PI: 5.0785
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011286genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + + + G  +W+tI++  g+ R++k+c++rw +yl
      DCAR_011286 14 RGPWTIEEDRKLMNFILENGIQCWRTIPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding48.91.5e-1569110346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        ++ E+ +++++++ +G++ W++Ia++++ gRt++++k++w++
      DCAR_011286  69 MLSETEENQIIQLHAHFGNR-WAKIASHFP-GRTDNEIKNHWNT 110
                      56899***************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-21563IPR009057Homeodomain-like
PROSITE profilePS5129415.99961IPR017930Myb domain
SuperFamilySSF466895.39E-2811108IPR009057Homeodomain-like
SMARTSM007175.2E-91363IPR001005SANT/Myb domain
PfamPF002492.1E-121461IPR001005SANT/Myb domain
CDDcd001675.34E-71661No hitNo description
PROSITE profilePS5129425.71462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-2464116IPR009057Homeodomain-like
SMARTSM007175.3E-1466114IPR001005SANT/Myb domain
PfamPF002491.5E-1468110IPR001005SANT/Myb domain
CDDcd001674.32E-1171110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDRKLMNFIL ENGIQCWRTI PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGML SETEENQIIQ LHAHFGNRWA KIASHFPGRT DNEIKNHWNT RIKKRLKLLG  120
VDPVTHSPIE PKEKSEMITE TTPDSTSPVP ETRPETSDIT DKKSEMNAGS DETMNLSSNY  180
EGLLENLDVL LWMNQEANTS TSYSPSFSLE ESLSNPLMGE SSYIQEDTIQ QWGQSVDSML  240
SWDDFNQLQE ELYYFGYR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017241175.10.0PREDICTED: myb-related protein 315-like
SwissprotP813944e-91MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A166B9M50.0A0A166B9M5_DAUCS; Uncharacterized protein
STRINGVIT_14s0219g00050.t011e-115(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.16e-81myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]