PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_011259 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | NAC | ||||||||
Protein Properties | Length: 268aa MW: 30630.4 Da PI: 6.512 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.1 | 2.9e-22 | 11 | 108 | 35 | 128 |
NAM 35 kev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmhey 126 +e +i++++P++L+ +k++ + ++F k+ ++ya+gkrk+r+++ s +W++tgk+k v++ +g ++g kk+Lv+y+ + k++k++Wvmh+y DCAR_011259 11 QEEgGICYTHPEHLR-GIKKDGSIAHYFYKSMNAYASGKRKRRKIQsndSVRWHKTGKTKLVME-NGVKKGYKKILVLYTTvtKGCKPVKSNWVMHQY 106 44448*********7.7778888889999999***********866555889***********9.999***********5433777889********* PP NAM 127 rl 128 +l DCAR_011259 107 HL 108 98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 22.495 | 1 | 127 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.48E-25 | 11 | 127 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-7 | 35 | 108 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MFIDRFIITL QEEGGICYTH PEHLRGIKKD GSIAHYFYKS MNAYASGKRK RRKIQSNDSV 60 RWHKTGKTKL VMENGVKKGY KKILVLYTTV TKGCKPVKSN WVMHQYHLGT EDDEKEGEYV 120 VSKVFYQQRH NPISKEDSVC PEKDISGPDK QEDSKTNNDI KIDIVRTPAQ EMEIIKNLHY 180 TSPSGSQSIF ETDFPSLSAE EIGKPSSPCK EDITSETDGI TDLEDIPANP RVHSVLFEDF 240 TFFSEGHFEW DDKVQTEHNA VTSHMFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 47 | 52 | KRKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017239081.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like | ||||
Swissprot | Q6NQK2 | 3e-50 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A161WUU7 | 0.0 | A0A161WUU7_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8175 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-52 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_011259 |