PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_011258 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 38776.7 Da PI: 5.8061 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.1 | 8.9e-33 | 43 | 180 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...sgyWkatg 87 lppG++F+Ptd el+ ++L++k++ + l+ + + ++e +i++++P++Lp +k++ ++ ++F+k+ ++ya+gkrk+r+++ s +W++tg DCAR_011258 43 LPPGVKFDPTDAELL-DHLAAKCRVGNqrsnmyLDKFIItLQEEgGICYTHPENLP-GIKKDGSNAHYFHKSMNAYASGKRKRRKIQsedSVRWHKTG 138 79*************.899999887764566553333344777769**********.77888999*******************866556889***** PP NAM 88 kdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 k+k+v++ +g ++g +k+Lv+y+ +++k++k++Wvmh+y+l DCAR_011258 139 KTKPVME-NGVTKGHRKILVLYTTapNNRKAVKSNWVMHQYHL 180 *******.99************5434788899*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-35 | 32 | 199 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.281 | 43 | 199 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-14 | 44 | 180 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
METKVESIPP SDKQMIDSGE GLICSNCCCS LDCADVLQEW TNLPPGVKFD PTDAELLDHL 60 AAKCRVGNQR SNMYLDKFII TLQEEGGICY THPENLPGIK KDGSNAHYFH KSMNAYASGK 120 RKRRKIQSED SVRWHKTGKT KPVMENGVTK GHRKILVLYT TAPNNRKAVK SNWVMHQYHL 180 GTEDDENEGE FVVSKVFYQQ KNVKVVDNLI AKEESVHPDI YISSPRKQEE NTKNDWTIDI 240 VKTPAQEVEA IKTIPHTSPS RSQSITETEF PSWSAGEICK PSLCKEDMLG GIAGMTEEVY 300 IRVDSPMYPD FFEELQQYLD GRGNRKDEVL IECNDVTSHS RE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 124 | KRKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017237198.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like isoform X2 | ||||
Swissprot | Q6NQK2 | 4e-68 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A166B8W9 | 0.0 | A0A166B8W9_DAUCS; Uncharacterized protein | ||||
STRING | XP_006470226.1 | 7e-82 | (Citrus sinensis) | ||||
STRING | EOY02531 | 7e-82 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8175 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-70 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_011258 |