PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011242
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 359aa    MW: 39133.1 Da    PI: 10.3733
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011242genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-15155201148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g W + Ed  l+d+v+++G++ W++Iar+m+ gR +kq+++r++++l
      DCAR_011242 155 KGHWIPAEDRMLLDLVAKYGSRKWSLIARMMP-GRLGKQLRERYNNHL 201
                      6889****************************.*************97 PP
2Myb_DNA-binding51.42.5e-16207249145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +W++eEd +l++a+++ G++ W+ I++ ++ gR++ ++k+rw+
      DCAR_011242 207 KEAWSPEEDMKLIKAHEKIGNK-WAQISKLLP-GRSESDIKNRWN 249
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.438151201IPR017930Myb domain
SuperFamilySSF466892.96E-29153248IPR009057Homeodomain-like
SMARTSM007177.8E-14154203IPR001005SANT/Myb domain
PfamPF002491.0E-13155201IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-23156207IPR009057Homeodomain-like
CDDcd001671.61E-13158201No hitNo description
PROSITE profilePS5129423.231202256IPR017930Myb domain
SMARTSM007172.2E-16206254IPR001005SANT/Myb domain
PfamPF002491.5E-15207249IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-21208254IPR009057Homeodomain-like
CDDcd001672.22E-13209252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MVTESNNYRQ NFGFGPNSSM FGNNQMNPMN QQVAYNMSQR APMNLHFQNP GRQIPAIGGS  60
SVNPPAQNFF ADPPLFAAPG GHGSAAGYMT NNGLVPAASG NDYPGLFHSS ASQNPVAVQP  120
RAYPVPANPG VGAGRAPGNR KAKKRNQRNP GNNIKGHWIP AEDRMLLDLV AKYGSRKWSL  180
IARMMPGRLG KQLRERYNNH LKPGLKKEAW SPEEDMKLIK AHEKIGNKWA QISKLLPGRS  240
ESDIKNRWNA TKRKCINAIS KTHTNPKPSS LFENYVKNMF NRMVLNSSPV SAESTVMTGS  300
SSGGSNYQMA VTDADGSGGV DDGLMDYGLQ SSFDPNVLAN HGQSSQFESM SYMEMLLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-361542546107B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A166B8940.0A0A166B894_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-45myb domain protein 98