PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_011144 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 222aa MW: 25530.3 Da PI: 7.2561 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.3 | 5.5e-18 | 31 | 84 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k DCAR_011144 31 KKRRLNLEQVKALEKSFELGNKLEPERKVQLARALGLQPRQIAIWFQNRRARWK 84 4557899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131 | 4.7e-42 | 30 | 120 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE+sFe +kLeperKv+lar+Lglqprq+a+WFqnrRAR+ktkqlE+dy+ Lkr++dalk++n++L++++++L+ el DCAR_011144 30 EKKRRLNLEQVKALEKSFELGNKLEPERKVQLARALGLQPRQIAIWFQNRRARWKTKQLERDYTILKRQFDALKADNDSLRTQNKKLHGEL 120 69*************************************************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.88E-19 | 22 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.844 | 26 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.8E-18 | 29 | 90 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.0E-15 | 31 | 84 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.31E-15 | 31 | 87 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 38 | 85 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.5E-6 | 57 | 66 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 61 | 84 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.5E-6 | 66 | 82 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.2E-16 | 86 | 127 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MRRSMSFTGC EEVRGEEDQS DDEGSQSLGE KKRRLNLEQV KALEKSFELG NKLEPERKVQ 60 LARALGLQPR QIAIWFQNRR ARWKTKQLER DYTILKRQFD ALKADNDSLR TQNKKLHGEL 120 LALKGKESGS NIENRPINLN KESTHHEGSW SNGSDNSCDH VNTTAGLTQL FLQSSSTPDL 180 MHPHQKLNQT VNPDETFCSM FNSIEDHPGF WPWPEQHQNY N* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 86 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DARKUROE | 0.0 | D26577.1 Daucus carota mRNA, homeobox and leucine zipper. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017238565.1 | 1e-164 | PREDICTED: homeobox-leucine zipper protein ATHB-13-like isoform X1 | ||||
Swissprot | Q8LC03 | 7e-65 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A166B5N5 | 1e-164 | A0A166B5N5_DAUCS; Uncharacterized protein | ||||
STRING | POPTR_0017s11800.1 | 6e-87 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA848 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 3e-67 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_011144 |
Publications ? help Back to Top | |||
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