PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011144
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 222aa    MW: 25530.3 Da    PI: 7.2561
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011144genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.5e-183184356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  DCAR_011144 31 KKRRLNLEQVKALEKSFELGNKLEPERKVQLARALGLQPRQIAIWFQNRRARWK 84
                 4557899**********************************************9 PP

2HD-ZIP_I/II1314.7e-4230120191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl+ eqvk+LE+sFe  +kLeperKv+lar+Lglqprq+a+WFqnrRAR+ktkqlE+dy+ Lkr++dalk++n++L++++++L+ el
  DCAR_011144  30 EKKRRLNLEQVKALEKSFELGNKLEPERKVQLARALGLQPRQIAIWFQNRRARWKTKQLERDYTILKRQFDALKADNDSLRTQNKKLHGEL 120
                  69*************************************************************************************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-192288IPR009057Homeodomain-like
PROSITE profilePS5007116.8442686IPR001356Homeobox domain
SMARTSM003895.8E-182990IPR001356Homeobox domain
PfamPF000463.0E-153184IPR001356Homeobox domain
CDDcd000863.31E-153187No hitNo description
Gene3DG3DSA:1.10.10.601.5E-183885IPR009057Homeodomain-like
PRINTSPR000317.5E-65766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000317.5E-66682IPR000047Helix-turn-helix motif
PfamPF021831.2E-1686127IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MRRSMSFTGC EEVRGEEDQS DDEGSQSLGE KKRRLNLEQV KALEKSFELG NKLEPERKVQ  60
LARALGLQPR QIAIWFQNRR ARWKTKQLER DYTILKRQFD ALKADNDSLR TQNKKLHGEL  120
LALKGKESGS NIENRPINLN KESTHHEGSW SNGSDNSCDH VNTTAGLTQL FLQSSSTPDL  180
MHPHQKLNQT VNPDETFCSM FNSIEDHPGF WPWPEQHQNY N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17886RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDARKUROE0.0D26577.1 Daucus carota mRNA, homeobox and leucine zipper.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238565.11e-164PREDICTED: homeobox-leucine zipper protein ATHB-13-like isoform X1
SwissprotQ8LC037e-65ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A166B5N51e-164A0A166B5N5_DAUCS; Uncharacterized protein
STRINGPOPTR_0017s11800.16e-87(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.13e-67HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]