PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011133
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 396aa    MW: 44104.4 Da    PI: 6.9826
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011133genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.44.2e-51141421128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 
                  + pGfrFhPtdeelv +yL++k+++++l++ e ik+vdiyk++PwdLp+ ++++eke yf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+  +
  DCAR_011133  14 MLPGFRFHPTDEELVGFYLRRKIQQRPLHI-ELIKQVDIYKYDPWDLPSLASTGEKESYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSdgS 110
                  579***************************.89***************88888999**************************************9666 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++ +glkk+Lvfy+gra kg ktdW+mhe+rl
  DCAR_011133 111 SKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 142
                  667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-5612173IPR003441NAC domain
PROSITE profilePS5100554.93914173IPR003441NAC domain
PfamPF023651.9E-2416142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEDKNESAKI DEVMLPGFRF HPTDEELVGF YLRRKIQQRP LHIELIKQVD IYKYDPWDLP  60
SLASTGEKES YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGS SKCIGLKKSL  120
VFYRGRAAKG IKTDWMMHEF RLPPIPEVGA PKKFLDKSLP PHDSWAICRI FKKANSMAQR  180
ALTHSWVSPL PGTTTSDMFS HSTQFSPENL SCMTQNGSVI QLCNELQQNS TAGFSALDIP  240
SYRPLNSASF YRPYSSGVPH GDHNNGFALS PPDVSPPSTQ SAVDVTSMFF DVSPTIIADP  300
DKTTEGINFG GPQQQFNNFS VSSPEDMQGN TNTCALDAAS TKNLIRAHEA NQCDNMQSIG  360
FPFSLSSSLA DTWKRNLQWD SPTCPSEMSA NYSEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-501617619168NO APICAL MERISTEM PROTEIN
1ut4_B3e-501617619168NO APICAL MERISTEM PROTEIN
1ut7_A3e-501617619168NO APICAL MERISTEM PROTEIN
1ut7_B3e-501617619168NO APICAL MERISTEM PROTEIN
4dul_A3e-501617619168NAC domain-containing protein 19
4dul_B3e-501617619168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017239791.10.0PREDICTED: protein FEZ-like
SwissprotQ9ZVH05e-99FEZ_ARATH; Protein FEZ
TrEMBLA0A166B5B10.0A0A166B5B1_DAUCS; Uncharacterized protein
STRINGPOPTR_0004s12850.11e-179(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22022262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-101NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]