PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_011099

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

ZF-HD

Protein Properties

Length: 302aa MW: 33067.9 Da PI: 11.8908

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_011099	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	91.4	8.5e-29	57	114	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 v Y++ClkNhAa++Ggha+DGC+E++p++ + ++ ++++CaACgCHRnFHRre+e++ DCAR_011099 57 VVGYRDCLKNHAAHIGGHALDGCCEYIPAPANPADNTTIRCAACGCHRNFHRRETEHH 114 578************************9888*******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.8E-24	58	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.169	60	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-17	60	109	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.6E-24	60	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MDITNNSNTS IKTPEAESET PTRIQAPKPV NTNGLLRRHH PVIQAAVQPP PPPHMPVVGY 60 RDCLKNHAAH IGGHALDGCC EYIPAPANPA DNTTIRCAAC GCHRNFHRRE TEHHHRAMVE 120 FQSPHRHHPP PPPPPPPPPP PHPDQPELPH RLHRRSRPLT TPLPPPTCSS LSAPLPRPWP 180 TRPPPRAHPP TPARGSGPNS LTTRRRKCSS SPGKSAGKSR SATRRPSPTS ATRSASTGAF 240 SKSGCTTTKA LMLVETTRST RTPPMMPRIA AVEARTRWRR ITKLARTMLL MGMDLQLRLN 300 Q*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A161WUD2	0.0	A0A161WUD2_DAUCS; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	5e-25	homeobox protein 34

Link Out ? help Back to Top
Phytozome	DCAR_011099