PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_011075 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 399aa MW: 44578.9 Da PI: 4.1663 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.5e-19 | 47 | 96 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g DCAR_011075 47 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 96 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.31E-32 | 46 | 103 | No hit | No description |
PROSITE profile | PS51032 | 19.559 | 47 | 104 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-37 | 47 | 110 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-19 | 47 | 105 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-27 | 47 | 103 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.8E-14 | 47 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-8 | 48 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-8 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 399 aa Download sequence Send to blast |
MARKRKVGEA VSERSSEEGN GGWDDMVKES GCVSEVDVGG VRRARKRFVG VRQRPSGRWV 60 AEIKDTIQKI RVWLGTFDTA EEAARAYDEA ACLLRGANTR TNFWPSPNSS SSAPALPTKI 120 TNLLLHRLKA RNNSLAAASS TCSPAMTYVE KEQEECRDEL QEFSDSQFTD FLNDTEDYVP 180 LQEMFTSASS DTSEHYSTTN STFEPSCDEK GNMIQVNGLD VDYNCGDLAD QSSGSQCSSD 240 VTNDEGKVEE EGEEDTSAMD LHFVDELESA FSCPFEIAEE IAEQGTYEGE PMMISEAMER 300 MKYERKFSAS LYAFNGVNEC LKLKLRSANA TQKAYPDQLS KLKNACYNYQ NKQKEEEEEQ 360 ECEVVAETKQ DQEVEICNNE GESSLWNSLD LEPICYVN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-13 | 40 | 103 | 7 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017240897.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
TrEMBL | A0A166B3R7 | 0.0 | A0A166B3R7_DAUCS; Uncharacterized protein | ||||
STRING | cassava4.1_008867m | 1e-122 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4310 | 20 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-22 | related to AP2 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_011075 |