PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_010930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 71aa MW: 8381.72 Da PI: 11.5044 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.8 | 5.2e-20 | 4 | 56 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t+eq++ Le F ++++++ e++ ++A++lgL+ rqV vWFqNrRa+ + DCAR_010930 4 KRKLTNEQVNMLELNFVNEHKLDSERKDRIASELGLDPRQVAVWFQNRRARSR 56 4589***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 85.4 | 7.7e-28 | 3 | 61 | 2 | 60 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlE 60 +kr+l++eqv++LE +F +e+kL++erK ++a+eLgl+prqvavWFqnrRAR ++ l DCAR_010930 3 RKRKLTNEQVNMLELNFVNEHKLDSERKDRIASELGLDPRQVAVWFQNRRARSRMSTLS 61 8****************************************************987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 5.2E-16 | 1 | 62 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.487 | 1 | 58 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.77E-12 | 3 | 56 | No hit | No description |
SuperFamily | SSF46689 | 1.97E-17 | 4 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.5E-17 | 4 | 56 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-19 | 8 | 56 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.0E-6 | 29 | 38 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 33 | 56 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.0E-6 | 38 | 54 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 71 aa Download sequence Send to blast |
MFRKRKLTNE QVNMLELNFV NEHKLDSERK DRIASELGLD PRQVAVWFQN RRARSRMSTL 60 SLKMSMTTQL * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251314.1 | 2e-31 | PREDICTED: homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 4e-27 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A166B035 | 4e-43 | A0A166B035_DAUCS; Uncharacterized protein | ||||
STRING | AT4G36740.1 | 2e-25 | (Arabidopsis thaliana) | ||||
STRING | XP_010432141.1 | 2e-25 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2715 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 2e-29 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_010930 |
Publications ? help Back to Top | |||
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