PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_010924 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | G2-like | ||||||||
Protein Properties | Length: 365aa MW: 40809.1 Da PI: 7.8651 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.4 | 5.7e-32 | 242 | 297 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k r++W+peLH+rFv+a++qLGG+++AtPk+i+e+m+v++Lt+++vkSHLQkYRl+ DCAR_010924 242 KRRRCWSPELHRRFVNALQQLGGPHVATPKQIREVMQVNDLTNDEVKSHLQKYRLH 297 689***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.576 | 239 | 299 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-28 | 240 | 300 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.62E-17 | 241 | 300 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-27 | 242 | 297 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.5E-7 | 244 | 295 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MGVNSPLSEP EFDLNSSFVP VNISEFLKEI SVITDVSERA MKMDDYVLQL QDELNKVHAF 60 KRELPLCMLL LNDAIERLKE EKMKCGEIET GPLIEEFMTL KGGKSDENGG VIKSIDCSEK 120 KNWMSSVQLW STNVQFHNFG HDFLSNLKSK VREEDGSRSS GGYDETRDKL QSSGGAFVPF 180 KRQSGQIVKE KIDNLLKEKN KTLPVNNLSL RVPMVEIGSI DRNSKGNVRG TSRSDSALPE 240 RKRRRCWSPE LHRRFVNALQ QLGGPHVATP KQIREVMQVN DLTNDEVKSH LQKYRLHVRK 300 VPAAKLNCPW FGQDQHISMS NSSISQSGSP EGPLGCGKGV STTGGDSMEE EEKSEGRNWK 360 GSSN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 240 | 244 | RKRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00629 | PBM | Transfer from PK14402.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017241901.1 | 0.0 | PREDICTED: uncharacterized protein LOC108214423 isoform X1 | ||||
TrEMBL | A0A166AZY8 | 0.0 | A0A166AZY8_DAUCS; Uncharacterized protein | ||||
STRING | XP_004288067.1 | 1e-101 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8497 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 2e-50 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_010924 |