PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010871
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 155aa    MW: 17234.1 Da    PI: 6.526
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010871genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.81e-161463255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  ykG+r +k +g+WvAeIr p   +kr r++lg++ +a+ Aa+a++ a  +l+g
  DCAR_010871 14 PYKGIRMRK-WGKWVAEIRQP---NKRSRIWLGSYSSAKAAARAYDTAVYYLRG 63
                 59*****99.**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-361477IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-211472IPR016177DNA-binding domain
PROSITE profilePS5103222.0621471IPR001471AP2/ERF domain
PfamPF008471.4E-101563IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-291572IPR001471AP2/ERF domain
CDDcd000182.60E-251573No hitNo description
PRINTSPR003672.9E-111526IPR001471AP2/ERF domain
PRINTSPR003672.9E-115373IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MEGGGVGMRK RKNPYKGIRM RKWGKWVAEI RQPNKRSRIW LGSYSSAKAA ARAYDTAVYY  60
LRGPSARLNF PELVASEDAD QLLLAGAQLS ADAIRAKAIE VGSRVDALET TSANNLNNNS  120
THDEDDDDDE LDLNKMPKPE PADDSDQHHL QHQW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-16171172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238380.11e-111PREDICTED: ethylene-responsive transcription factor ERF010-like
SwissprotO221747e-51ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A161XZ881e-109A0A161XZ88_DAUCS; Uncharacterized protein
STRINGXP_010550358.12e-51(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.11e-30DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]