PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_010855 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 239aa MW: 26679.2 Da PI: 5.1523 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.1 | 1.6e-16 | 70 | 120 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +Wv+e r+p +k+ r++lg+f tae+Aa+a++ a+ +l+g DCAR_010855 70 PVYRGVRRRN-HDKWVSEAREP---NKKSRIWLGTFPTAEMAARAHDVAAIALRG 120 68*****887.8******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.0E-12 | 70 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-21 | 71 | 130 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.3E-28 | 71 | 134 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.904 | 71 | 128 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-30 | 71 | 130 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.04E-30 | 72 | 130 | No hit | No description |
PRINTS | PR00367 | 3.2E-8 | 72 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-8 | 94 | 110 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MDHFFSSSTS SYSAPQHPYH SSSAHSQSEN TGNGNASAEP IYISDEEVLL ASSNPKKRGG 60 RKKFQETRHP VYRGVRRRNH DKWVSEAREP NKKSRIWLGT FPTAEMAARA HDVAAIALRG 120 RNACLNFADS AWRLPVPASS DPQDIQRAAA EAAETFRPSE NEHAVQRTSP EQSLMISQQQ 180 SEVSYVDEEE LFGMPEYIND MAQGMMLPPP QFGPSDVYYG TEDDMEGTTD LSLWNYSF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-13 | 69 | 127 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017240737.1 | 1e-179 | PREDICTED: dehydration-responsive element-binding protein 1B-like | ||||
Swissprot | Q9FJ93 | 2e-72 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A166AYE7 | 1e-178 | A0A166AYE7_DAUCS; Uncharacterized protein | ||||
STRING | XP_009784267.1 | 9e-83 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51990.1 | 2e-74 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_010855 |
Publications ? help Back to Top | |||
---|---|---|---|
|