PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010791
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 343aa    MW: 38677.2 Da    PI: 7.3097
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010791genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.2e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+ ++++ G+g +W + ++++g++R++k+c++rw++yl
      DCAR_010791 14 RGPWSPEEDAKLKSYIQEQGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding36.41.2e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
      DCAR_010791  69 GDFSHEEDNIICTLYMSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.276962IPR017930Myb domain
SuperFamilySSF466895.85E-2611109IPR009057Homeodomain-like
SMARTSM007172.4E-111364IPR001005SANT/Myb domain
PfamPF002491.2E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231569IPR009057Homeodomain-like
CDDcd001671.62E-81662No hitNo description
PROSITE profilePS5129421.41263117IPR017930Myb domain
SMARTSM007177.2E-1167115IPR001005SANT/Myb domain
PfamPF002491.6E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2370117IPR009057Homeodomain-like
CDDcd001671.10E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKSYIQ EQGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSHEEDNIIC TLYMSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEVQHSRR SSSCYLKVKQ QYETAMKNLD DESQANINNI QPDQSNSSGD CIPKLHPDQA  180
TMYPTLYTTH DLPPHPIKKH DQETFYDFPF NISSSTFENY HLPPNDNLNH SLKFPVSSTL  240
MDYYSTTTTT TTTTSNNSQL SNTTHAYSSD LASYLNTFPN INQMDETILY GFDEMSSLCG  300
VDIVNAGTSN PAGSTTSWKG DMSSFVCAFE EPAYIGIHQH LS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141177108B-MYB
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8161271e-152FJ816127.1 Daucus carota clone GSSR-17 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240987.10.0PREDICTED: transcription factor RAX3-like
TrEMBLA0A161XZ300.0A0A161XZ30_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-79myb domain protein 84