PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010767
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 380aa    MW: 42700.1 Da    PI: 6.2547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010767genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.1e-13193239455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h ++Er+RR+r+ ++f  L  ++P +     kKl+Ka++L  Av+Y+k+Lq
  DCAR_010767 193 DHVIAERKRRERLTERFIALSAIVPGL-----KKLDKASVLGDAVKYLKQLQ 239
                  5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.447189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15193252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10194239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.50E-13194243No hitNo description
SuperFamilySSF474592.22E-16194251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-14195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.681305379IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MPMEMPPNKW NSEQVREGVD FNGINHFKME SLHFDTLDDF TSEQYLLTLP ESNFGKSLSS  60
ESYNATFFPT DHLQDPRDFR NDNMADESNI SDSFERPAKQ LKTSTWNPSP GKQANVIPSS  120
SSSQIISFSN VSSQTLDHQG SCGYSRDDKV LLPYEDLMDS NASYDNDNYT VIAGKPIRRP  180
NAVPVKAPSH VQDHVIAERK RRERLTERFI ALSAIVPGLK KLDKASVLGD AVKYLKQLQQ  240
RVELLEEQIK KKKKFEESPI VSQNDSSKLP AASEGYSSSC DDNSGGYPNK TTAEIEARIL  300
EKNVLIKIHC KKQKGFVSKM LSVIEQLHLT VISSNVLPFG DYAMDITVIC QMHAECSLTV  360
EELVRKLQSA LQQYPDRAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-12193260876Transcription factor MYC2
5gnj_B2e-12193260876Transcription factor MYC2
5gnj_E2e-12193260876Transcription factor MYC2
5gnj_F2e-12193260876Transcription factor MYC2
5gnj_G2e-12193260876Transcription factor MYC2
5gnj_I2e-12193260876Transcription factor MYC2
5gnj_M2e-12193260876Transcription factor MYC2
5gnj_N2e-12193260876Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197202ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017239727.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A162AJI70.0A0A162AJI7_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-41bHLH family protein