PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_010751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB_related | ||||||||
Protein Properties | Length: 173aa MW: 20411.5 Da PI: 10.0887 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.8e-16 | 98 | 145 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +Ed ll ++ +++G g W++++r+ g++R++k+c++rw++yl DCAR_010751 98 KGAWGSDEDTLLTKCMHKYGEGKWSLVPRRAGLNRCRKSCRLRWLNYL 145 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.866 | 93 | 149 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-20 | 93 | 147 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-12 | 97 | 147 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 98 | 145 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.37E-18 | 99 | 172 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.42E-8 | 100 | 145 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-4 | 148 | 172 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MYNEFLRYSL VPGYVRWPPV IIQKRLFLQQ PVRQKEAVIF EDEEDLEEDE DSEQGDQPSQ 60 QPRRSVKYKK CDKRFYINKA RNTVLKPMTS GNDSKLRKGA WGSDEDTLLT KCMHKYGEGK 120 WSLVPRRAGL NRCRKSCRLR WLNYLRPTIK RGEFGADEVD LMMRLHKLLG NR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A161XZ01 | 1e-125 | A0A161XZ01_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 8e-37 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_010751 |