PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_010747 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 287aa MW: 32500.3 Da PI: 9.8725 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.8 | 8.1e-16 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +Ed ll ++++++G g W++++++ g++R++k+c++rw++yl DCAR_010747 11 KGAWGSDEDALLRKCIHKFGEGKWHLVPQRAGLNRCRKSCRLRWLNYL 58 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 35.9 | 1.8e-11 | 64 | 114 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqk 46 rg + ++E +l +++k+lG++ W++Ia +++ gRt++++k++w++ DCAR_010747 64 RGEFGEDEVDLMMRLHKLLGNRqalsllLWSLIAGRLP-GRTANDVKNFWNT 114 79999*********************************.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.654 | 1 | 62 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-20 | 3 | 60 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.63E-22 | 9 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-13 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-15 | 11 | 58 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.50E-8 | 13 | 58 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-18 | 61 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.589 | 63 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-7 | 63 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-10 | 64 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.25E-6 | 66 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MKNCNPLKVR KGAWGSDEDA LLRKCIHKFG EGKWHLVPQR AGLNRCRKSC RLRWLNYLRP 60 TIKRGEFGED EVDLMMRLHK LLGNRQALSL LLWSLIAGRL PGRTANDVKN FWNTNVQKKL 120 ATAHFGGHKE VVKGKELIKT KQNSSATTCT ATTHTVVKPL PRTLSQGTSV LYYSLNPRKH 180 MYSPPGKILK NRLSSNETRA LEIPVSDLDG NEWWRNLFVE IGIDDEGSFE GLLKTSSSNL 240 ENLGDQRCPI LKTNESFAPV TEATGLQEED CRSWSDIWNL LNLDYI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-19 | 11 | 122 | 7 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017239714.1 | 0.0 | PREDICTED: transcription factor MYB75-like | ||||
Swissprot | Q9FNV9 | 8e-57 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A162AJH6 | 0.0 | A0A162AJH6_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-57 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_010747 |
Publications ? help Back to Top | |||
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