PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010747
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 287aa    MW: 32500.3 Da    PI: 9.8725
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010747genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.88.1e-161158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W  +Ed ll ++++++G g W++++++ g++R++k+c++rw++yl
      DCAR_010747 11 KGAWGSDEDALLRKCIHKFGEGKWHLVPQRAGLNRCRKSCRLRWLNYL 58
                     799*******************************************97 PP

2Myb_DNA-binding35.91.8e-1164114146
                      TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqk 46 
                      rg + ++E +l  +++k+lG++       W++Ia +++ gRt++++k++w++
      DCAR_010747  64 RGEFGEDEVDLMMRLHKLLGNRqalsllLWSLIAGRLP-GRTANDVKNFWNT 114
                      79999*********************************.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.654162IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-20360IPR009057Homeodomain-like
SuperFamilySSF466891.63E-229112IPR009057Homeodomain-like
SMARTSM007176.4E-131060IPR001005SANT/Myb domain
PfamPF002495.7E-151158IPR001005SANT/Myb domain
CDDcd001671.50E-81358No hitNo description
Gene3DG3DSA:1.10.10.607.6E-1861120IPR009057Homeodomain-like
PROSITE profilePS5129410.58963120IPR017930Myb domain
SMARTSM007173.8E-763118IPR001005SANT/Myb domain
PfamPF002494.3E-1064114IPR001005SANT/Myb domain
CDDcd001676.25E-666116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MKNCNPLKVR KGAWGSDEDA LLRKCIHKFG EGKWHLVPQR AGLNRCRKSC RLRWLNYLRP  60
TIKRGEFGED EVDLMMRLHK LLGNRQALSL LLWSLIAGRL PGRTANDVKN FWNTNVQKKL  120
ATAHFGGHKE VVKGKELIKT KQNSSATTCT ATTHTVVKPL PRTLSQGTSV LYYSLNPRKH  180
MYSPPGKILK NRLSSNETRA LEIPVSDLDG NEWWRNLFVE IGIDDEGSFE GLLKTSSSNL  240
ENLGDQRCPI LKTNESFAPV TEATGLQEED CRSWSDIWNL LNLDYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-19111227110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017239714.10.0PREDICTED: transcription factor MYB75-like
SwissprotQ9FNV98e-57MY113_ARATH; Transcription factor MYB113
TrEMBLA0A162AJH60.0A0A162AJH6_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-57myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]