PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010746
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 293aa    MW: 32849.2 Da    PI: 8.0043
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010746genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.8e-161764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W  +Ed ll ++++++G g W++++r+ g++R++k+c++rw++yl
      DCAR_010746 17 KGAWGSDEDALLRKCIEKYGEGKWHLVPRRAGLNRCRKSCRLRWLNYL 64
                     799*******************************************97 PP
2Myb_DNA-binding25.14.1e-08861082346
                      -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  23 tWktIartmgkgRtlkqcksrwqk 46 
                      +W++Ia +++ gRt++++k++w++
      DCAR_010746  86 RWSLIAGRLP-GRTANDVKNFWNT 108
                      5*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.7181168IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.7E-211467IPR009057Homeodomain-like
SuperFamilySSF466893.99E-2115106IPR009057Homeodomain-like
SMARTSM007171.3E-131666IPR001005SANT/Myb domain
PfamPF002491.2E-141764IPR001005SANT/Myb domain
CDDcd001671.49E-91964No hitNo description
Gene3DG3DSA:1.10.10.606.8E-1468114IPR009057Homeodomain-like
SMARTSM007170.006469112IPR001005SANT/Myb domain
PROSITE profilePS512948.89569114IPR017930Myb domain
CDDcd001671.37E-573110No hitNo description
PfamPF002494.3E-686108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MHSKGMKITG KPLKVRKGAW GSDEDALLRK CIEKYGEGKW HLVPRRAGLN RCRKSCRLRW  60
LNYLRPTIKR GDFDADEVDL MVRLHRWSLI AGRLPGRTAN DVKNFWNTNF QKKLATTSYH  120
GQKQVVEGEE LINRKQTCSA TTHEVVKPLP RTLSKGASVP CCNLNTHCDM HSPLPGEIIY  180
DKISSSNINN DNNNNIIINK ITSPGTPLQD QDGIEWWKDI FAEIGTQGQE EGSLEGQLMA  240
SSGGLKNLEA ESGLIWKKDE SFDPATATTA LPDEDVRSCW SDILDLLNQD YS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-16171167110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240932.10.0PREDICTED: transcription factor MYB75-like
SwissprotQ9FNV92e-52MY113_ARATH; Transcription factor MYB113
TrEMBLA0A166AVP40.0A0A166AVP4_DAUCS; Uncharacterized protein
STRINGXP_009605381.15e-59(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-53myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]