PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010745
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 296aa    MW: 33119.4 Da    PI: 7.4705
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010745genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W  +Ed ll +++ ++G g W++++r+ g++R++k+c++rw++yl
      DCAR_010745 13 KGAWGSDEDALLRKCIDKYGEGKWHLVPRRAGLNRCRKSCRLRWLNYL 60
                     799*******************************************97 PP
2Myb_DNA-binding24.66e-08821042346
                      -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  23 tWktIartmgkgRtlkqcksrwqk 46 
                       W++Ia +++ gRt++++k++w++
      DCAR_010745  82 KWSLIAGRLP-GRTANDVKNFWNT 104
                      4*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.724764IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-201062IPR009057Homeodomain-like
SuperFamilySSF466896.79E-2111102IPR009057Homeodomain-like
SMARTSM007177.4E-131262IPR001005SANT/Myb domain
PfamPF002493.6E-141360IPR001005SANT/Myb domain
CDDcd001677.88E-91560No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1363110IPR009057Homeodomain-like
SMARTSM007170.02865108IPR001005SANT/Myb domain
PROSITE profilePS512949.11265110IPR017930Myb domain
CDDcd001672.95E-571106No hitNo description
PfamPF002497.0E-682104IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MIKSTGNPLK VRKGAWGSDE DALLRKCIDK YGEGKWHLVP RRAGLNRCRK SCRLRWLNYL  60
RPTIKRGDFA ADEVDLMVRL HKWSLIAGRL PGRTANDVKN FWNTNFHKKL TTTSYHGQKQ  120
VVEEEELINR KQTSSATTSN ASTHEVLKPL PRTLSKGASI PCCNLNTHCD MHSPLPGEII  180
YDKISGNDIN NNDNNNSNII INKIKSPATP LQDQDGIEWW KDIFAEIGTQ GPEEGSLEGL  240
LMASSGGLKT LDAESGLIWK KDESFDPATA TTALPDEDVR SCWSDIWDLL NQDYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-15131127110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240778.10.0PREDICTED: transcription factor MYB113-like
TrEMBLA0A166AVM20.0A0A166AVM2_DAUCS; Uncharacterized protein
STRINGSolyc10g086250.1.15e-59(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-53myb domain protein 113