PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010715
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 382aa    MW: 42816.9 Da    PI: 8.5489
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010715genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH44.33e-14303328126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +ktelC+ + ++G+C+yG++C+FaHg
  DCAR_010715 303 QKTELCNKWEESGECPYGNNCRFAHG 328
                  69***********************8 PP
2zf-CCCH22.12.6e-07341366126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykte+Cr f ++  C+yG rC+F H+
  DCAR_010715 341 YKTEICRMFIAGNKCPYGHRCHFRHP 366
                  9**********99**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.8E-17297335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-10299334IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-8302329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.826302330IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-11303328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-11336365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8337366IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5340367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.103340368IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSNENNNSSS NNSNSGTTAA NIVSSSSSNS SPRRLHSINI INDVTNSIDP FYNSPTTCSS  60
YNQFLPSDDE YFSTFNPCIN DFLLSTNTNS LSNSPSSDDL SFDHFSNAIA AQNRLNQANF  120
ILENNHLHDY SYTTYLSTLY KSIKQLNALR QENENLRLAN ADLVSRINLL SQAHGRVSSS  180
RPFLNNNYNS HNSVGDTRAI TKSSVSPTSV IQQNNLDKRN HRRSAAVHPK NISVRSANHL  240
KTNDQRGDIT GNMSRANPNS NTYQQGITTA PSLNQQRRAY LNGVKRELEG FEMDIEVYNQ  300
GMQKTELCNK WEESGECPYG NNCRFAHGIA ELRPVIRHPR YKTEICRMFI AGNKCPYGHR  360
CHFRHPSTAH QDILQAHASF N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-22304365566Butyrate response factor 2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240911.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A166AUZ90.0A0A166AUZ9_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-50C3H family protein