PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_010666

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

GRAS

Protein Properties

Length: 591aa MW: 65574.1 Da PI: 7.8344

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_010666	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	339.7	5e-104	227	590	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++ L+e+A+a+s+g+l a+++L+r+s+ ++++g++ +Rl ay+ AL++rl++ + +p++ ++++a+ ++++evsP++k+++++aN DCAR_010666 227 KQSLTEAATAISEGKLDIANEILTRVSKVSNKQGTAEERLMAYMCSALKTRLNQ-------TENPQDLY---GKDHMASIQMLYEVSPCFKLGFMAAN 314 689************************************************9.......33444444...99******************** PP GRAS 100 qaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 aIlea+ + +H+iDfdi+q +Q++ Ll+aLa+++ + l+iT++ + ++ l+++g+ L+ +A+++gv+++f+v + +++dl++ DCAR_010666 315 LAILEALPDDennVNLHVIDFDIGQAGQYIHLLHALAAKRtaNRVIALKITTFLD----YATDLKAVGDGLKVLASKVGVNLSFRV-MNLNINDLNIG 407 ***665422456*****************6663445559****....99********************9.799**** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 ++ ++ gE laVn++++l++l+desvs+e+ rde+L+ vk+lsPkvv++veqe++ n++sF++r+ e++ yy alf+sl+a++pr++ er+k+E+ l DCAR_010666 408 SFGLEVGEILAVNFAFRLYKLPDESVSTENLRDELLRRVKNLSPKVVTLVEQEMNANTASFVARVNETCGYYGALFESLDATVPRNKPERVKIEEG-L 504 *********************************************************************************************. PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r+ +n vaceg++r+er+e l+kWr+r+++aGF++ +ls+k ++ + l+ + g++++ee g + +gW++r+L+++SaWr DCAR_010666 505 SRKMSNSVACEGRDRVERCEVLGKWRARMRMAGFEEKRLSQKLGESLRVKLNSGTrvNPGFTIKEEAGGISFGWMGRTLTVASAWR 590 **********************************************99987665789************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.226	200	568	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-101	227	590	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm

Sequence ? help Back to Top
Protein Sequence Length: 591 aa Download sequence Send to blast
MASGFSGGYS DFSISGSMNT RSVNDPRRPY MSNLAGMDSD VSSQMFNRRP EPTGKRSLSE 60 FQQHFQQQQQ LALYLRNVKQ RASYQQNASP ISPLSPPVDF YGHSQSPDIS SLSSNSAYRI 120 PIFQQLRQHQ QQQQQRQQHQ HVNNMILSAK PEAPAEKNMM HRLQELEKAL LDDDEDQNDV 180 VAATSVVTNS EWSDTIQRLI GTDHTTVSPS PASSSSSCSS PSIICAKQSL TEAATAISEG 240 KLDIANEILT RVSKVSNKQG TAEERLMAYM CSALKTRLNQ TENPQDLYGK DHMASIQMLY 300 EVSPCFKLGF MAANLAILEA LPDDENNVNL HVIDFDIGQA GQYIHLLHAL AAKRTANRVI 360 ALKITTFLDY ATDLKAVGDG LKVLASKVGV NLSFRVMNLN INDLNIGSFG LEVGEILAVN 420 FAFRLYKLPD ESVSTENLRD ELLRRVKNLS PKVVTLVEQE MNANTASFVA RVNETCGYYG 480 ALFESLDATV PRNKPERVKI EEGLSRKMSN SVACEGRDRV ERCEVLGKWR ARMRMAGFEE 540 KRLSQKLGES LRVKLNSGTR VNPGFTIKEE AGGISFGWMG RTLTVASAWR *

Sequence ? help Back to Top

Protein Sequence Length: 591 aa Download sequence Send to blast

MASGFSGGYS DFSISGSMNT RSVNDPRRPY MSNLAGMDSD VSSQMFNRRP EPTGKRSLSE  60
FQQHFQQQQQ LALYLRNVKQ RASYQQNASP ISPLSPPVDF YGHSQSPDIS SLSSNSAYRI  120
PIFQQLRQHQ QQQQQRQQHQ HVNNMILSAK PEAPAEKNMM HRLQELEKAL LDDDEDQNDV  180
VAATSVVTNS EWSDTIQRLI GTDHTTVSPS PASSSSSCSS PSIICAKQSL TEAATAISEG  240
KLDIANEILT RVSKVSNKQG TAEERLMAYM CSALKTRLNQ TENPQDLYGK DHMASIQMLY  300
EVSPCFKLGF MAANLAILEA LPDDENNVNL HVIDFDIGQA GQYIHLLHAL AAKRTANRVI  360
ALKITTFLDY ATDLKAVGDG LKVLASKVGV NLSFRVMNLN INDLNIGSFG LEVGEILAVN  420
FAFRLYKLPD ESVSTENLRD ELLRRVKNLS PKVVTLVEQE MNANTASFVA RVNETCGYYG  480
ALFESLDATV PRNKPERVKI EEGLSRKMSN SVACEGRDRV ERCEVLGKWR ARMRMAGFEE  540
KRLSQKLGES LRVKLNSGTR VNPGFTIKEE AGGISFGWMG RTLTVASAWR *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-37	225	590	11	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017243472.1	0.0	PREDICTED: scarecrow-like protein 8
TrEMBL	A0A169WC76	0.0	A0A169WC76_DAUCS; Uncharacterized protein
STRING	Gorai.007G012300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4023	24	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	1e-134	SCARECROW-like 8

Link Out ? help Back to Top
Phytozome	DCAR_010666