PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_010628 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 364aa MW: 40977.6 Da PI: 4.6609 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.8e-19 | 121 | 170 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ kl+g DCAR_010628 121 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 170 89*******.**********82....35*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-29 | 120 | 178 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.9E-38 | 121 | 184 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.7E-13 | 121 | 170 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.48E-33 | 121 | 177 | No hit | No description |
SuperFamily | SSF54171 | 1.9E-21 | 121 | 178 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.63 | 121 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-10 | 122 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-10 | 144 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MDHHSMLCPI KFTEHRNITK KLTNPLIKKA KKFTEKRIVR ISVTDPDATD SSSDEEDELF 60 GRQRIKRYIN EISIEAGCKN NVVSLPNANA KKKKKDMRVN SKAKPMKPAQ AAPPANGNVR 120 KFRGVRQRPW GKWAAEIRDP ARRVRLWLGT YDTAEEAAMV YDNAAIKLRG PDALTNFVTP 180 ALKEKPEVNI GSVSGYESGE ESNNNLCSPT SVLRFRSQSN EEAEECHSAN EPTSHEPADL 240 MDPIFEPVEP VYESAEPFYH EPVCHEPVHP FVQECEDETF INSMFDFQSP APLSFDDDLT 300 FSDGFSNIPF DDNSIFGNDW LNNGEEMSSQ WVNDIGSPAL FQVDDYFQDI NGDFFATDVL 360 MAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-21 | 120 | 177 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017238735.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
TrEMBL | A0A169WAK6 | 0.0 | A0A169WAK6_DAUCS; Uncharacterized protein | ||||
STRING | XP_009596437.1 | 1e-108 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 4e-53 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_010628 |