PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_010609 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 174aa MW: 19598.2 Da PI: 9.9101 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.9 | 8.2e-21 | 19 | 69 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+G+r+++ +g+W+AeIrdp++ +r++lg+f taeeAa+a+++ ++k++g+ DCAR_010609 19 PYRGIRRRP-WGKWAAEIRDPKK---GARVWLGTFNTAEEAARAYDKKALKIRGA 69 59*******.**********954...4*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.94E-23 | 19 | 77 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-37 | 19 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.645 | 19 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-33 | 20 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-12 | 20 | 31 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.6E-14 | 20 | 68 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.10E-34 | 20 | 77 | No hit | No description |
PRINTS | PR00367 | 3.4E-12 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MINCGENPEH SVKRQRKNPY RGIRRRPWGK WAAEIRDPKK GARVWLGTFN TAEEAARAYD 60 KKALKIRGAK AKLNFPNKVN EALKIRGAKA KVNFLNKVGD SHVQLNTKKP SGSNSPSEFS 120 ADYTSLNSYE ACKKFCESPY FDEMVVGPAS IEPENVVEDD MLNLWSFDFD IVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-24 | 20 | 80 | 6 | 67 | ATERF1 |
3gcc_A | 1e-24 | 20 | 80 | 6 | 67 | ATERF1 |
5wx9_A | 5e-24 | 20 | 80 | 15 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 26 | KRQRKNPYRGIRRRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017239692.1 | 1e-124 | PREDICTED: ethylene-responsive transcription factor ERF071-like | ||||
TrEMBL | A0A161WT75 | 1e-125 | A0A161WT75_DAUCS; Uncharacterized protein | ||||
STRING | XP_009608570.1 | 2e-37 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 1e-35 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_010609 |