PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010532
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 319aa    MW: 35405.4 Da    PI: 6.3417
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010532genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.7e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l ++++++G g+W++ ++  g++R++k+c++rw +yl
      DCAR_010532 14 KGPWTPEEDEKLMNYIQMHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.431965IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-25964IPR009057Homeodomain-like
SMARTSM007179.0E-151363IPR001005SANT/Myb domain
PfamPF002491.2E-171461IPR001005SANT/Myb domain
SuperFamilySSF466891.24E-231588IPR009057Homeodomain-like
CDDcd001676.95E-121661No hitNo description
PROSITE profilePS500904.12462119IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.9E-86588IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRSPGYEES GVKKGPWTPE EDEKLMNYIQ MHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SNEEEQTIIN LHSVLGNKPR TDHLDILANL PHLLAAANNL NMSPVNPWDF  120
NAFRSQISDV AQLAKLQLMQ NLLQVLSPNA TPLVPSTSRT LPNQDYPLND FFIHNNPQSF  180
QGTMVQNSVA PNTPANVMTN SECLNRGNDF YQHLSASKTS FQDTVDHHQL STTSCPDIGK  240
HLSSDSLPAL IPASPERPAR DQTGFILETS GGSRNSSSNC TNFDDFGDQL MYDGASDQAY  300
WKDFIDQASS SSQWPILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-151488780B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238509.10.0PREDICTED: transcription factor MYB39-like
RefseqXP_017238510.10.0PREDICTED: transcription factor MYB39-like
TrEMBLA0A166ATH10.0A0A166ATH1_DAUCS; Uncharacterized protein
STRINGVIT_16s0039g01710.t011e-76(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-57myb domain protein 9